Hippoglossus hippoglossus (Atlantic halibut): 117768460
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Entry
117768460 CDS
T07778
Symbol
npc1l1
Name
(RefSeq) NPC1-like intracellular cholesterol transporter 1
KO
K14461
Niemann-Pick C1-like protein 1
Organism
hhip
Hippoglossus hippoglossus (Atlantic halibut)
Brite
KEGG Orthology (KO) [BR:
hhip00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
02000 Transporters [BR:
hhip02000
]
117768460 (npc1l1)
Transporters [BR:
hhip02000
]
Solute carrier family (SLC)
SLC65: NPC-type cholesterol transporter
117768460 (npc1l1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Patched
NPC1_N
Sterol-sensing
MMPL
Folate_rec
Motif
Other DBs
NCBI-GeneID:
117768460
NCBI-ProteinID:
XP_034452707
LinkDB
All DBs
Position
9:19410022..19421338
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AA seq
1357 aa
AA seq
DB search
MVHVTSLVVFLTCMVLSEAQHEPGYCAFYEECGTNPLIDKPLIPAIVPCLNYSRARLVTG
SHYTQLKKVCPILDRGKKNTYACCSTQQLTSLDKSLALSKAVLNRCPSCAENFAHLHCIN
TCSPNQSQTVKITKVMNLTDDSNVTREVVVGYQAFLSDTFADGSFQSCKNVRIPATGGFA
ISTMCGRYGAKLCTAQRWYDFQGDSSNGLAPLDINFRLIKEGYTEGLPEGVIPYNGRALK
CNETTPSGGQVCSCLDCQESCPSIPPPPLPPGPFRLLGTDGFLVISIILLCLLIFAFLLY
LFVSYWVMSKKRDDEKKGKRKANGKDQNSNEVTQRLIDPSEVTCADRNSLAAQAFLSSWF
RHWGILMATYPLTVLLLSAAVVAVFAAGLKSIELTTDPVELWSAPDSRARQEKKFHDTYF
DPFFRTNQLILTAPNRKGYIYDSLLFGPQNFSGIISKDLIIQLLELQTQIQNIEFWSEDL
NRTASLKDVCFAPLNPNNVSLTDCATNSLPQYFQNSLDNINAKVNMTELGVTKEVDWRDH
LIYCLNSPLSFKDITDLGMSCMADYGAPVFSFLAVGGYTNDDFTNAEALILTFSLNNYAR
TNTKFKVAMQWETEFLKIVQKYQKNPANNFTFAYMAERSLEDEINRTTSEDIPIFMISYA
VIFLYISVALGEYTSWKRILVDSKFLVGLGGILVVGCSVLTSMGFYSWIGIPSSLVILQV
VPFLVLAVGADNIFIFVLEYQRDARRPEEKREEQIGRVLGNVAPSMLLCSLSESICFFLG
ALSTMPAVKTFALYAALAVLMDFILQMTAFVALLSLDARRQDNNRCELLCCVTVSTQRPN
KPNEGFLLPLMRKYYAPVLLSRYSRILVMLVFIFMLCGSVFLMFNVTVGLDQELAMPKGS
YMLDYFQFLYKYFEVGVPVYFVTKRGFNFTTVEGMNSVCSSAGCDEFSLTQKIQYATNDP
DLSYLAIPANSWVDDFIDWLNPGSKCCRVYTTGQNTGSFCPATETDNRCRRRCMPIPLNG
VLRPSVEKFNRFLPDFLGNRPDLQCPKGGLGAYDKAVVRDASGEIIASRFMAYHTPLTNS
QEFTAALLKSRELAYNITMGMRKVNGTSPDFEVFPYTVTNVFYEQYLTIVPEGLFNISLC
LLPTFVVCCLLLGLDLRSGLLNLATIIMIVVDTVGVMTLWSIDYNAVALINLVTAVGISV
EFVSHMTRSFALSTKPSHVERAMEATANMGSAVVAGVAMTNLPGILVLAFAKAQLIQIFF
FRLNLIITLLGLAHGLIFLPVLLSYFGPDVNKAVLLQLQQEKAKVSQELETGSHMRHVYD
NLSYEDIEIKPEPDSNAVTAASGPSTIIEKEERSDRF
NT seq
4074 nt
NT seq
+upstream
nt +downstream
nt
atggtccacgtaacgagcctggttgtttttctgacttgtatggttctgtccgaggcccag
catgagcctggctactgtgctttctatgaggagtgtggaactaacccactgatagataag
ccccttattcctgctattgtcccctgtctaaactacagcagagcccgacttgtcacagga
agtcactacactcaactcaaaaaggtgtgtcccatcttggaccgtggcaagaagaacact
tacgcctgctgctcaactcaacagttgacatcccttgataagagcctggccctgtccaag
gccgtgctgaaccgttgtccctcctgcgctgagaactttgcccacctgcactgcatcaac
acctgcagccccaaccagagccagacagtgaaaatcacaaaggtcatgaacctcactgat
gattcaaacgtgacgagggaggtcgtggtgggttaccaggcgttcctcagcgacaccttt
gcagacgggtcattccagtcctgcaaaaatgtcaggatacctgccacagggggtttcgcc
atcagcaccatgtgtggacgatacggcgccaagctgtgtaccgctcagcgctggtatgac
ttccagggagactccagcaacggcctggctccactggacatcaacttcaggctgataaag
gagggatacactgagggactaccagagggtgtgattccctacaacggacgtgcactgaag
tgtaacgagaccacaccttcaggaggccaagtctgctcctgcctagactgccaagagtcg
tgcccgagtatacctcctccaccgctgcccccgggtcccttcagactcttggggacagac
ggcttccttgtgatctccatcatcttgctctgtctcctgatatttgccttcctattgtac
ctctttgtctcttactgggtgatgtctaagaagagagacgatgaaaagaaaggaaagagg
aaggcgaacggcaaagaccagaacagtaatgaggtgactcagcgactcattgacccgtcg
gaggtgacgtgcgctgacaggaacagcctggcagctcaagctttcctgagctcatggttt
cggcactggggaatcctcatggccacttatcctctcacagtgctcctgctgtcggctgcg
gtcgtggctgttttcgctgccggcctcaaatccatcgagctcaccactgacccagtggag
ctgtggtccgctcccgacagccgggcccgccaggagaaaaagttccacgacacatacttt
gaccccttcttcaggaccaaccagctgatcttgacagcgccaaacagaaagggctacatt
tatgattccttgctgtttggaccacagaactttagtgggatcatatctaaggatctcatc
atccagctgctggagctccagacacaaatacagaacattgagttctggtcagaggatctg
aaccgcacagcgagtctgaaggatgtgtgtttcgcgcctctgaacccaaacaacgtctcc
ctgacggactgtgcaaccaacagtttgccacagtacttccagaacagcctggacaacatt
aacgctaaggtgaacatgacagagctgggggtgaccaaagaggtggactggagagaccac
ttgatctactgcctcaactctcccctgtccttcaaagacatcactgatttggggatgagc
tgcatggctgactacggcgctccagtcttctcctttctagcagtgggaggctatacgaat
gacgacttcaccaatgccgaggctttaatcctgaccttctccctcaacaactacgctcgc
accaacaccaagtttaaagtggccatgcagtgggaaacagagtttcttaaaattgtccaa
aagtaccagaaaaaccctgccaacaacttcacctttgcatacatggcagagaggtccctg
gaggacgagataaatcggaccacgtcagaggacatccccatctttatgattagctatgct
gtcatctttctttacatttctgttgctctgggagagtacacttcatggaaacgcatactg
gtggactccaagttcctggtgggtctgggtgggatcctggtggtcggctgctctgtcctg
acttccatgggcttctactcctggatcggcatcccctcttcgctggtcattctgcaggtt
gtgcccttcctggtgctcgctgtaggagctgacaacatcttcatctttgttctggagtac
cagagagatgcacgaagacctgaagaaaaaagagaggagcagattggacgtgtccttgga
aacgtcgctcccagcatgctcctgtgcagtctgtctgagtctatctgcttctttctaggg
gccctctccaccatgccagcagtcaagaccttcgctctgtacgctgctctggctgtgctc
atggacttcatcctgcagatgacggcctttgtggcgctgctgtccctggatgcccggcgc
caagacaacaaccgctgtgaactgctctgctgtgtcacagtgtcaacgcagcgtcccaac
aagccaaatgagggctttctgctgcccttaatgaggaaatactacgcccccgtcctactg
agccgctacagcaggatcttagtgatgttggttttcatcttcatgctctgtggatctgta
ttcctcatgtttaatgtcacagttggtctggatcaggagctggctatgccaaagggctct
tatatgttggactatttccagttcttgtacaaatactttgaagttggagttcctgtttac
tttgtcacaaaaaggggcttcaacttcaccactgtggagggcatgaatagcgtctgctcc
agcgcgggttgtgatgaattctcactaacccagaagatccagtacgccaccaatgaccct
gacctatcctacttggctattcctgctaactcttgggtggatgacttcattgactggctg
aaccctggatcaaaatgttgtcgtgtgtacaccaccggtcaaaatactggaagcttctgt
cctgcaactgaaactgataaccgctgtaggcgtagatgtatgcctattcctctgaatggc
gtcctcaggccaagtgtagaaaaattcaaccgtttcctccctgacttcctgggtaacagg
cctgacctgcagtgccccaaaggtggtcttggggcctacgacaaggccgtggtgagagat
gcgagcggagaaattatagcctctcggttcatggcttaccacacacctttaacaaactct
caggagttcactgctgcgctgctgaagtccagagagctggcctacaatatcaccatgggc
atgaggaaagtcaatggcacctcacctgactttgaagtatttccctacacggtaacgaat
gtgttttacgagcagtacctgactatcgtgccagagggactcttcaacatctcgctgtgt
ctgctgccgaccttcgtggtgtgctgcctgcttctgggcctggacctgcgctccggcctg
ctcaacctggccaccataatcatgatcgtcgtggacactgtgggcgtcatgacactgtgg
agcatcgactacaacgcagtggcccttatcaatctggtcacggcggtgggcatctctgtg
gagtttgtgtcacatatgacaagatcctttgcgctcagcaccaagccctcacatgtggaa
agagcaatggaggctacagccaatatgggcagtgcggtagttgctggtgttgctatgacc
aacctgccgggcatccttgtgctggcgtttgccaaagcacagctcatccagatcttcttc
ttccggttaaacctgatcatcacacttctggggctggctcatggactcatcttcctccct
gtgctgcttagctactttggtcctgatgtgaacaaggcagtgctgctgcagctgcaacag
gagaaagcaaaggtcagccaggagctggagacggggagccacatgagacatgtctatgat
aacctgagctatgaagacattgagataaaaccggagccagactcaaatgctgtcacagct
gcaagcggaccttcaaccattatagaaaaagaggagagaagtgaccgtttctga
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