Hippoglossus hippoglossus (Atlantic halibut): 117777886
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Entry
117777886 CDS
T07778
Symbol
lig1
Name
(RefSeq) DNA ligase 1
KO
K10747
DNA ligase 1 [EC:
6.5.1.1
6.5.1.6
6.5.1.7
]
Organism
hhip
Hippoglossus hippoglossus (Atlantic halibut)
Pathway
hhip03030
DNA replication
hhip03410
Base excision repair
hhip03420
Nucleotide excision repair
hhip03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
hhip00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
117777886 (lig1)
03410 Base excision repair
117777886 (lig1)
03420 Nucleotide excision repair
117777886 (lig1)
03430 Mismatch repair
117777886 (lig1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
hhip03032
]
117777886 (lig1)
03400 DNA repair and recombination proteins [BR:
hhip03400
]
117777886 (lig1)
Enzymes [BR:
hhip01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
117777886 (lig1)
6.5.1.6 DNA ligase (ATP or NAD+)
117777886 (lig1)
6.5.1.7 DNA ligase (ATP, ADP or GTP)
117777886 (lig1)
DNA replication proteins [BR:
hhip03032
]
Eukaryotic type
DNA Replication Elongation Factors
Other elongation factors
117777886 (lig1)
Prokaryotic type
Elongation factors (archaeal)
Other elongation factors
117777886 (lig1)
DNA repair and recombination proteins [BR:
hhip03400
]
Eukaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
Long Patch-BER factors
117777886 (lig1)
NER (nucleotide excision repair)
Other NER factors
117777886 (lig1)
MMR (mismatch excision repair)
Other MMR factors
117777886 (lig1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_A_M
DNA_ligase_A_N
DNA_ligase_A_C
Motif
Other DBs
NCBI-GeneID:
117777886
NCBI-ProteinID:
XP_034468848
LinkDB
All DBs
Position
17:complement(21337038..21381747)
Genome browser
AA seq
1013 aa
AA seq
DB search
MQRSIASFFQPKSKDKDAQKKPADKPVKKPVKTPLKVQNGAPEADSPIKKVAKRSRQILD
SDEDEAPVVKERVAAKGQGDKEASNKSEKKDDVFKAVPTPLSPPPAPTTPATPATPATPA
TPATPASSASPGTPSTPNSTSPSEIVKRKTARKMFPKRKLDESRSGSESQKEEAEEKEER
GQQKKRPRMEPVADGAGDAGEPMEEGAKEEDAEKAVTAANSQDEEVENKKKEDGEKAKEE
RRADGESCDEREKKAEGAEKKKEAKEKSDDEKGAATAKKKEVVEKDTREGEESPKSQTAK
EQKDKEPAKKAPISSFFAPRKVAVKTEKVEKNDGEKKTSAERKSSAEESKDTKSESTSGQ
TDYDPSRPGYHPVDHACWKQGQRVPYLAVARTFEKIEEDSGRLRNIETLSNLLRSVLLLS
PDDLLCCVYLCLNQLGPAYLGMELGVGETVLMKAVAQATGRQLDKIKAEAQEKGDLGLVA
ESSRSNQRMMFQPASLTAGGVFRKLKEIASMSGNSAMNKKIDIIKGLFVACRFAEARYIV
RSLAGKLRIGLAEQSVLSALTLAVCLTPPGQGFPPAVIDAGKGMSAESKKAWIEEKSLIL
KQTYCEMPNYDILLPVLLKEGIDQLPNHCKLTPGVPLRPMLAHPTKGVGEVLKRFDEAAF
TCEYKYDGERAQIHILESGEVRVFSRNQEDNTSKYPDIISRIPKVKKDSVVSCVLDAEAV
AWDREKKQIQPFQVLTTRKRKDVDASEIKVQVCVYAFDLLYLNGESLVRQPLCRRRALLK
ESFSEVEGEFVFARSIDSDNTDAIAEFLEQSVRDSCEGLMVKTLKKDATYEIAKRSHNWL
KLKKDYLEGVGDTMDLCVIGGYMGKGKRTGTYGGFLLACYDEENEEFQSVCKIGTGFKDE
DLEQHYKFLKDHILPKPRAYYRFDQSAEPDVWLDAMQVWEVKCADLSLSPIYKAAMGLVD
PVKGISLRFPRFLRIRDDKKPEDATSGAQIADLYKKQQQIQNQGDKADPEDYY
NT seq
3042 nt
NT seq
+upstream
nt +downstream
nt
atgcagcggagcatcgcatccttcttccagcccaagagcaaagacaaggatgctcagaag
aaacccgcagataaaccggtgaaaaagcctgtgaagactcctctcaaggtgcagaacgga
gcgccagaggctgattcccccatcaagaaggttgccaagcgcagccgtcaaatcctggac
agcgacgaagacgaggcacccgttgttaaagagcgagtcgccgccaagggacaaggagac
aaagaagcctccaataaatcagaaaagaaggacgatgtgttcaaggcagtgcccacccct
ctgtctccacctccagcccccaccaccccggcaacacctgccaccccagccacaccagcc
accccagccacccccgcctcatcagcgtcaccggggacccccagcacgccaaactcaacc
tccccgtctgagatcgttaaacgcaagacagcgagaaagatgttccccaagaggaagctg
gatgagagcaggagcggcagcgagagtcagaaagaggaggccgaggaaaaggaggagcgg
ggtcagcaaaagaaacgaccccgcatggagcccgtcgccgacggtgcaggggacgccggt
gaacccatggaggagggcgcaaaggaagaggacgctgaaaaggcagtgaccgcagctaac
agccaggatgaagaggtggagaacaagaagaaagaggacggagagaaggccaaagaggag
aggcgggcggacggagagagctgcgatgagagagaaaagaaagctgagggggcggaaaag
aaaaaggaagcaaaggagaagagcgatgatgagaaaggtgctgccactgccaagaagaag
gaggtggttgaaaaggacacgcgagagggagaagagagcccaaaaagtcaaacagcgaaa
gagcagaaagataaggagccggccaagaaagcccccatcagcagtttctttgctcccagg
aaagttgcagtgaagacggagaaggtggagaaaaatgacggagagaaaaagacaagtgcg
gagaggaagagttcagcagaggagagtaaagacacaaaaagtgagtcaacttcgggacaa
acagactacgatccgtccaggcccggatatcatcccgtggaccacgcctgctggaagcag
ggccagagggtcccgtacttggctgtggctcgcacctttgagaagattgaagaggactct
ggcaggctgagaaacatcgagacactgtcaaacctgctccgctctgtgctgctgctctct
ccagacgacctgctgtgctgtgtgtacctgtgtttgaaccagctgggtcctgcctacctg
gggatggagcttggcgttggggagactgtgctgatgaaagctgttgctcaagcaactggg
cgacaattggacaaaattaaggccgaggcgcaggagaagggagatttgggcctagtggcc
gagagttcccgtagcaaccagcgcatgatgtttcaaccggccagcctgacagcagggggc
gtgttcaggaaattgaaggaaattgccagcatgagcgggaactcggccatgaataagaaa
atcgacatcatcaaaggcctctttgtggcatgccgcttcgccgaggcccgctacatagtc
aggtccctggctgggaagctgaggataggcctggctgagcagagcgtcctatcagcactc
actctggctgtgtgcttgaccccacctggacaaggtttccctcccgctgtgatcgatgca
gggaaggggatgagcgctgagagcaagaaggcctggatcgaagagaagagtctcatcctc
aaacagacttattgcgagatgcccaattacgacatcctcctccccgttctcctgaaagag
ggcatagaccagctacccaatcactgcaagctcactccaggtgtaccgctgaggcccatg
ttggctcaccccacgaagggcgttggcgaggtgctgaagaggtttgacgaggcggcgttc
acctgcgagtacaagtacgacggcgagcgtgcacagattcacattctggagagcggcgag
gtgcgagtgttcagccgcaaccaggaagacaacaccagcaaataccctgatatcatctct
cgcattcccaaggtgaagaaggactctgtggtatcctgcgtcctggacgcagaggccgtc
gcctgggaccgtgagaagaagcagatccagcccttccaggtcctcaccacccgtaaaaga
aaggacgtggatgcctcggagatcaaagtgcaagtgtgcgtgtacgccttcgacctcctc
tatctcaacggcgagtccctggtgcgacagccgttgtgtcggcgtcgggctctgctgaaa
gaaagcttctcagaggtggagggagagtttgtgttcgcccgatccatcgactccgacaac
accgacgccatcgcagagttcctggagcagtctgttcgagattcctgtgagggcctcatg
gtgaagactctgaagaaggatgccacctatgaaattgccaagcgctctcataactggctc
aagctgaagaaggactacctggagggggtgggtgacacgatggacctgtgtgtgatcggc
ggctacatggggaaaggcaagaggacgggcacctacgggggcttcctgctggcgtgctac
gacgaggagaacgaggagttccagtccgtctgcaagatcggcaccggtttcaaggatgaa
gatctggagcaacattacaaattcttaaaggatcacattctgcccaaacctcgtgcctac
taccgcttcgaccaatcggcggagcccgacgtgtggctcgacgccatgcaggtctgggag
gtgaagtgcgccgacctgtcgctgtcgcccatctacaaggccgccatgggactggtggat
ccagtgaagggcatttcactgcggttccctcgcttcctccggatcagagacgacaaaaaa
ccagaggacgccacgtctggagctcagatcgctgatttgtacaagaagcagcagcagatt
cagaatcagggggacaaagccgacccagaggactactactga
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