Hippoglossus hippoglossus (Atlantic halibut): 117777984
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Entry
117777984 CDS
T07778
Symbol
tnn
Name
(RefSeq) tenascin-N isoform X1
KO
K06252
tenascin
Organism
hhip
Hippoglossus hippoglossus (Atlantic halibut)
Pathway
hhip04510
Focal adhesion
hhip04512
ECM-receptor interaction
Brite
KEGG Orthology (KO) [BR:
hhip00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
117777984 (tnn)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
117777984 (tnn)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
hhip00536
]
117777984 (tnn)
Glycosaminoglycan binding proteins [BR:
hhip00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
117777984 (tnn)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
fn3
Fibrinogen_C
EGF_Tenascin
EGF_2
Arylsulfotran_N
EGF
DUF460
hEGF
Motif
Other DBs
NCBI-GeneID:
117777984
NCBI-ProteinID:
XP_034469009
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All DBs
Position
17:13455827..13490407
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AA seq
1120 aa
AA seq
DB search
MPTRFLRRALCLWALLSTVSHLSYADNQADPSAPEQGVTFSHVYKIDMPGSSSCKLESQD
ESGLQTETTTNGQNDIIFRHNIRLQTPKCDCAESDSFKSLLYRVNGLEEEVNYLKTQCTQ
GCCGTGGAVGVDTSCSGHGTYQHDTCSCLCNPGWEGSDCSVSSCPDECNDNGRCVDGKCV
CQQGYTGDDCGQLTCPGNCSDKGRCVDGKCVCFPHFSGEDCSVAKCPNDCSTNGRCVDGQ
CICDEGFYGEDCSSVFGPQGLRVVQVTDVSLLVEWESVLGAEYYILTYHPKGAGALEQVR
IPNTKNSYLITGLTPGVTYIVQVYAVIKEIHSDADKIEATTDVSAIDDIQVLGQTEVSIL
VDWKNPPAEVDHFKLTHTDPEGQEEELNVQGSQEARTKHTIVGLYPGTEYLISVQAIKGT
TEGKTSSVTGATDNDAPKNFVTTQVTEDTATVSWDRVQAEIEGYMLSYTSAEGSSPEISV
GRDSTSYRLVGLRPGVVHTVYIWSYKGYKVSRKSSTEAETELDAPTNVLARDETESSFRV
SWDHTQAAVDGYVLTYSSSEGSSAEIPLGSDSNSHMLTDLKPGVLYTVYIWAVKGGKVSR
KISTQAVTELDAPANLLARDETESSFSVSWDPVQAEIDGYVLTYSSSEGSSGEIPVGPDR
TSYSLTGLRPGVIYTVYVWAVKGNKASRKTSTQSETDCDAPANLLARDETESSFSVSWDP
VQAQIDGYILTYSSSEGSSGEIPVGPDSISYTLTGLRPAVLYTVYVWAFKGGKVSRKIST
KAETDIDAPKDLKATDVTLDSASLTWIPPLADIEGYNLTYRDEEGNMEVLSQTVEKQLGA
IVSSFAVSSLETGKRYIVTLIAYRGSKRSRVVETIFKTVGFLYPFPMDCVQIMKNGNKKS
GIYTIFINNNSSKPIEVFCDMDTDGGGWLMLQRRTTGKLDFLKRWRQYIAGFGNMTDEFW
IGLDKIYELTNTPTQYELRFDLGLGSERVYAVYDNFKIDPVKQKFKLTIGKYSGTAGDAM
TYHQGRAWTTIDSDNDISLGNCALTHRGAWWYQNCHLANLNGKWGDSRHSLGVNWEPWKG
HLTSLDFTEMKIRPLGALSSRKRRSLLAREKSRNTNLQKK
NT seq
3363 nt
NT seq
+upstream
nt +downstream
nt
atgcccactcgattcctgcggagggccctgtgcctgtgggccctgctcagcaccgtctcg
cacctcagctacgccgacaaccaagcagacccctcagccccagagcagggagtcaccttc
agccacgtctataaaatcgacatgccagggagctccagctgtaaactggagagccaggac
gaatcaggtctgcagacagagacgactacgaacggacagaacgatataatcttcagacac
aacataaggctgcagacgcccaagtgcgactgtgcggagtctgacagtttcaagtctttg
ttgtacagagtcaatgggctggaagaagaagtcaactacctaaagacccagtgtactcag
ggctgttgtggaacaggtggtgctgtaggtgtggacacaagctgcagtggccatggtacc
taccaacacgacacctgcagctgcctctgtaacccgggatgggaaggctccgattgctca
gtgtcctcctgcccagatgagtgtaatgacaatggccgatgtgtggacgggaagtgtgtt
tgccagcagggctacacgggagacgactgcggccagctgacatgtccgggcaattgcagc
gacaagggacgctgcgtggacgggaaatgtgtgtgtttcccgcacttcagtggcgaagac
tgcagcgtagccaagtgtcccaatgactgcagcactaatggccggtgtgtggacggccag
tgcatctgtgatgaaggcttctatggagaggactgttcatcagtgtttggacctcagggt
ctgcgggtggtgcaggtgacggacgtctctctcctggtcgagtgggagtcagttcttggg
gcagaatattacattttgacatatcatcccaaaggtgctggagccctggagcaggtgcgg
attcccaacacaaagaactcctacctcatcacagggctgactcctggggtcacttacatt
gtccaggtgtacgcagtcatcaaagaaatccacagtgacgcagacaagatcgaggctaca
acagatgtctcggccatcgatgatattcaggttcttggccagacagaagtgtctatcctg
gtggactggaagaacccaccagctgaagtggatcacttcaagctcacacacactgacccg
gagggacaggaggaggagctgaatgtacagggcagccaggaggcgcgcaccaaacacact
atagtcggtctgtatccaggaaccgagtacctgatctcagtgcaggccatcaagggaaca
actgaggggaagacgtcctctgtcaccggggccacagacaacgatgctccgaaaaacttt
gtcaccacccaggtaacagaggatactgcaacggtttcctgggatcgagtccaggcagaa
atcgagggatacatgctgagctacacctccgctgagggctccagcccggagatctccgta
ggccgtgacagcacctcgtacaggctggttggcttgaggccgggagtcgtccacacagtc
tacatctggtcctacaagggatacaaagtcagcaggaagagttcgacagaggctgaaaca
gagctggatgcccctactaacgtcttggcccgcgatgagacagagtccagtttcagggtg
tcctgggatcacactcaggcagcagtcgacggctacgtcctcacctacagctcctctgag
ggctcaagtgcagaaatcccacttggatctgatagtaactctcacatgctgactgacctg
aagcccggcgtcctctacaccgtctacatctgggccgtcaaggggggcaaagtcagcagg
aagatctcaacacaggctgtgacagaactggacgctcccgctaacctcttagcccgagac
gagacagagtccagcttcagcgtgtcctgggatccggtccaggcagagatcgatggctac
gttctaacctacagctcctctgaaggatctagtggggagatcccagtcgggcctgacaga
acctcttacagtctgactggcttgaggccgggagttatctacactgtgtacgtctgggct
gtcaaggggaacaaagccagcaggaagacctcgacgcaatcggagacagactgcgacgct
cctgctaacctcttagcccgagatgagacagagtccagcttcagcgtgtcctgggatccg
gtccaggcacaaattgatggctacatcctaacctacagttcctctgagggctctagtgga
gaaatcccagtcgggcctgacagtatctcttacacgctgactggcctgagacctgcagtt
ctctatactgtctacgtctgggctttcaagggaggaaaagtcagcaggaagatctcaacc
aaagctgagacagatatcgatgcccccaaggacctgaaggctacggatgtgacactggac
tctgcctctctgacctggattcctcctctggcggacatagaaggttacaacctcacctac
agagacgaggaaggcaacatggaggtactgagccagactgttgaaaagcagctcggagcc
atcgtgagcagttttgctgtgtccagtctggagacggggaagcgatacatcgtcaccctc
attgcctacagaggcagcaagaggagtagggtggtggagacgatctttaaaacagttggc
ttcctataccccttccccatggactgcgttcagatcatgaagaacggaaataagaaaagc
ggaatctacaccatctttattaacaacaacagctccaaaccaattgaggtcttctgcgac
atggacactgacggaggcggctggctgatgctgcagcgccgtacaaccggcaagctggac
ttcctgaaacgctggaggcagtacatcgcaggttttggcaacatgacggacgagttctgg
atcgggctggataagatatacgagctcaccaacactccgactcagtacgagctgcgattt
gacctgggcctgggctcagagagggtctacgctgtgtatgacaactttaagatcgatcca
gtcaagcagaagttcaaactcaccatcggcaaatacagcgggacagcaggtgacgccatg
acctaccaccaagggcgagcctggaccactatcgactcggataatgacatctctctgggt
aactgcgccctgacccatcgcggcgcctggtggtaccaaaactgtcacctggccaacctg
aacggcaaatggggagacagccgacacagtttgggggtgaactgggagccgtggaagggc
cacctgacgtccctcgacttcacggagatgaagatccgacctctgggagccttgtccagc
aggaagaggcgatcgttgttggccagagagaagagcagaaacacaaacctccaaaagaaa
tag
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integrated database retrieval system
