Halomonas huangheensis: AR456_10420
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Entry
AR456_10420 CDS
T04119
Name
(GenBank) excinuclease ABC subunit B
KO
K03702
excinuclease ABC subunit B
Organism
hhu
Halomonas huangheensis
Pathway
hhu03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
hhu00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
AR456_10420
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
hhu03400
]
AR456_10420
DNA repair and recombination proteins [BR:
hhu03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
AR456_10420
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
AR456_10420
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrB_inter
UvrB
Helicase_C
ResIII
UVR
DEAD
AAA_30
DUF87
AAA_5
AAA_22
Kinesin
HEM4
UB2H
SWI2_SNF2
Microtub_bd
Motif
Other DBs
NCBI-ProteinID:
ALM52647
UniProt:
W1NBJ5
LinkDB
All DBs
Position
complement(2352907..2354934)
Genome browser
AA seq
675 aa
AA seq
DB search
MSKPFRLASKFQPAGDQPAAIEGLVQGLESGLAHQTLLGVTGSGKTFTMANIVERMQRPT
IVMAHNKTLAAQLYGEFKAFFPDNAVEYFVSYYDYYQPEAYVPSSDTFIEKDASINDHIE
QMRLSATKALLERRDALIVVSVSAIYGLGDPEQYLKMRLHFTRGELIDQRAFLRRLAELQ
YTRNDMDFKRGTYRVRGDVIDIFPADAEDEAVRVELFDDEIDSISLFDPLTGELRGKVPR
MTIYPKSHYVTPRETILGAIDGIKSELAERLAFLRKEDRLVEAQRLEQRSLYDIEMMMEL
GYCNGVENYSRYLSGRAPGEPPPTFFDYLPAESLLFIDESHVSVPQVGGMYRGDRSRKET
LVEYGFRLPSALDNRPMKFEEWEAISPQTIFVSATPGAYEAEHAGQVVEQVVRPTGLLDP
EIEVRPASTQVDDLLSEIRKRTSVEERVLVTTLTKRMAEDLTEYLDEHGVRVRYLHSDID
TVERVEIIRDLRLGKFDVLVGINLLREGLDIPEVSLVAILDADKEGFLRAERSLIQTIGR
AARNANGKAILYGDRITDSMRKAIDETARRREKQTAFNEEHGITPRTVTRSVADILEAAQ
APGSRRKGRKGERKVAEDKAGYDVSSLSVEDLRKEMSRLENEMLEAAQNLEFEEAARLRD
RLHELREQQLVLGAV
NT seq
2028 nt
NT seq
+upstream
nt +downstream
nt
atgagcaagccatttcgactggcatcgaaattccagcctgcgggcgatcagcctgctgca
atcgaggggctggtccagggactggagtcgggattggcccaccagacgctactgggtgtt
acggggtccggcaagaccttcaccatggccaatatcgttgagcgtatgcagcgtcccacg
attgtcatggcgcataacaagaccttggccgcgcagctgtatggcgagttcaaggcgttc
tttcccgacaatgcggtcgagtatttcgtttcctactacgactactaccagcctgaggcc
tatgtgccttcatcggataccttcatcgagaaggatgcctcgatcaatgaccacatcgaa
cagatgcgcctatcggcgaccaaggcgctgctggagcgtcgcgatgcgctgatcgtggta
tcggtgtccgccatctacggtctcggtgatcctgagcagtatctgaagatgcgcctgcac
ttcacacgcggggaattgatcgaccagcgcgccttcctgcgccgcctcgcggaactgcag
tacacccgcaacgacatggacttcaagcgtggtacctatcgggtgcgcggcgatgtcatt
gatatctttcccgccgatgccgaggacgaagcggtacgtgtcgagctgttcgatgatgag
atcgactcgatcagcctgttcgatcccttgactggcgagctgcgtggcaaggtgccgcgc
atgaccatctatcccaagagtcattacgtcacacctcgcgagaccatccttggcgctatc
gatggcatcaagtcggagctggccgagcggctggccttcctacgcaaggaagaccgcctg
gtcgaggcacagcgcctcgaacaacgctcgctgtatgacatcgagatgatgatggagctg
ggctactgcaacggggtggagaactactcgcgttatctgtccgggcgcgcgccgggcgag
ccgccgccgactttcttcgactatctaccggctgagtcgctgctgttcattgatgagtca
catgtcagcgtgccccaggtgggcggtatgtaccgtggtgaccgttcgcgcaaggagacg
ctggtcgagtatggattccgtcttccatcggcactcgacaaccggccgatgaagttcgaa
gaatgggaggcaatctctccgcagaccatctttgtctcggcgacccccggtgcctatgag
gccgagcatgccggtcaggtggtcgagcaggtcgtgcgtccgaccggactgctcgaccct
gagatcgaggtacgaccggcgtcgacccaggtggatgatctactgtcggagattcgcaag
cggaccagcgttgaggagcgcgtgttggtaaccacgctgaccaagcgcatggcagaggac
ctgaccgagtatctggatgagcacggtgtcagggtgcgttatctgcactcggatatcgat
accgtggagcgtgtcgagatcattcgcgatctacgtcttggtaagttcgacgtactggta
ggcatcaacctgctgcgtgaaggtctggatattccggaagtgtcgctggtggcgattctg
gatgccgacaaggagggcttcctgcgtgccgagcgttcactgattcagaccattggccgt
gctgcgcgtaacgccaatggcaaggcgattctgtatggcgaccggattaccgactcgatg
cgcaaggcgattgatgaaaccgcgcgtcggcgagagaagcagactgcattcaacgaagag
catggcattacgccgcgcaccgtgacgcgctcggtggccgatattctcgaagcggcccag
gcaccaggtagtcgtcgcaaggggcgcaagggcgaacgcaaggtggccgaggacaaggcc
ggctacgatgtcagttcgctgtccgtcgaggacctacgcaaggagatgagtcgactcgag
aatgagatgctggaggcagcccagaatctcgaattcgaggaagccgcgaggctgcgtgat
cgtctgcatgaactacgcgaacagcagttggtgctgggcgcggtctag
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