Hyaena hyaena (striped hyena): 120228367
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Entry
120228367 CDS
T07257
Symbol
LIG4
Name
(RefSeq) DNA ligase 4
KO
K10777
DNA ligase 4 [EC:
6.5.1.1
]
Organism
hhv
Hyaena hyaena (striped hyena)
Pathway
hhv03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
hhv00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
120228367 (LIG4)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
hhv03400
]
120228367 (LIG4)
Enzymes [BR:
hhv01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
120228367 (LIG4)
DNA repair and recombination proteins [BR:
hhv03400
]
Eukaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
DNA Ligase 4 complex
120228367 (LIG4)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DNA_ligase_A_M
DNA_ligase_A_N
BRCT
DNA_ligase_IV
DNA_ligase_A_C
BRCT_2
RNA_ligase
mRNA_cap_enzyme
RTT107_BRCT_5
ATG17_like
Motif
Other DBs
NCBI-GeneID:
120228367
NCBI-ProteinID:
XP_039082618
LinkDB
All DBs
Position
Unknown
AA seq
925 aa
AA seq
DB search
MPPCSQTSTFTVASMASSQTPQTVAAHVPFADLCSTLERIQRSKGCAEKIRHFREFLDSW
RRFHDALHKNQKDVRDSFYPAMRLILPQLERERMAYGIKETMLAKLYIELLNLPREGKDA
LKLLNYRTPTGTRGDAGDFAMIAYFVLKPRCLQKGSLTIWQVNDLLDSIASNNSARRKDL
VKKSLLQLITQSSALEQKWLIRMIVKDLKLGFSEQSVFSVFHNDAAELHNVTTDLEKVCR
QLHDPSIGLSDISITLFSAFKPMLAAIANIERIEKDMKHQSFYIETKLDGERMQMHRDGD
VYRYFSRKGYNYTEQFGDSPREGSLTPFIHSAFKTDVQTCILDGEMMAFNPDTQTFMQKG
TKFDIKRMVEDSELQTCYCVFDVLMINNKKLGRETLKKRYEILTSVFTPIPGRIDIVQKT
QAQTKKEVIDALNEAIDKREEGIMIKHPLSIYKPDKRGEGWLKIKPEYVDGLMDELDILI
VGGYWGTGSRGGMMSHFLCAVAEKPPPGEKPSVFHTLCRVGSGYTMKELYDLGLKLAKHW
KPFHRKAPPSSILCGTEKPEVYIEPCNSVIVQIKATEIVSSDMYKTGCTLRFPRIEKIRE
DKEWYECTTLDDLEQLRGKASGKLASKHLFVAGDDEPQEKRRKAAPKMKKVIGIIEHLKA
PNLSNVNKVSNIFEDVEFCVMSGTDSHPKPDLENRLAEFGGYIVQNPGPDTYCVIAGSEN
IRVKNIISSDKHDVVRPEWLLECFRTKRCVPWQPRFMIHMCPSTREHFAREYDRYGDSYF
TDADLNQLKEVFSAMKNSGELSPGEVASAIANLEYRYSWDRSPLSMFRHHIIYLDLYAVI
NDVSTKIEGTRLAFTALELRFHGAKVVSSLAQGVSHVIIGEDRSRVADLKAFRRTLKRKF
KILQQDWVTDSIDKSELQEENQYLV
NT seq
2778 nt
NT seq
+upstream
nt +downstream
nt
atgccaccttgcagtcaaaccagcacattcaccgtcgcttctatggcttcctcacagact
ccacagactgtcgcggctcacgttcctttcgcagatttgtgttccacgttagaacgaata
cagagaagtaaaggatgtgcagaaaaaatcagacacttcagggaatttttagattcttgg
agacgatttcacgatgcgcttcataagaaccaaaaagacgtcagggactctttttaccca
gcaatgagacttattctccctcagctcgaaagagagagaatggcctatggaatcaaagaa
accatgcttgctaaactttatattgaattgcttaatttacccagagaaggaaaagatgcc
ctcaagctgttaaactacaggacgcccaccggaacgcgtggtgatgccggggactttgcg
atgattgcatatttcgtgctgaaaccaagatgtttgcagaaaggaagtttaaccatatgg
caggttaatgaccttttagactccatcgccagcaataattctgccagaagaaaggacctg
gtgaaaaagagccttcttcagctgatcactcagagttcagccctagaacaaaagtggctt
atacggatgatcgtgaaggacttgaaactcggcttcagtgagcagtctgtgttttccgtt
ttccacaatgatgctgccgagttgcataatgtcaccacggatcttgaaaaggtctgcagg
caactgcacgacccttcgattggactcagcgatatttctatcactttattctctgccttc
aaacccatgctggctgccatcgcaaatattgagcgaattgagaaggacatgaaacaccag
agtttctacattgagaccaagctggacggtgagcgtatgcaaatgcacagggacggggat
gtgtatcggtacttctctcggaaagggtacaactacacggaacagtttggagattctcca
cgggaaggctctctgacaccgttcattcacagtgcattcaagacggacgtgcagacctgc
atcctggatggtgagatgatggccttcaaccctgatacacaaacttttatgcaaaagggg
actaagttcgatatcaaaagaatggtggaagattctgaactgcagacttgttactgcgtg
tttgatgtactgatgattaataacaaaaagctagggcgtgagaccctgaaaaagaggtat
gaaattctcactagtgtttttacaccaataccagggaggatagacatagtgcaaaaaaca
caagctcaaacgaagaaagaagtaattgatgccctgaatgaagcgatagacaaaagagaa
gagggaatcatgatcaaacatcctctatccatttacaagccagacaaaagaggtgaagga
tggttaaaaattaaaccagagtatgtggatgggctgatggacgaactagacatcttaatt
gtcgggggctactggggtacaggttcgcggggcggaatgatgtctcattttctgtgtgcc
gtagcggagaaacctcctcctggtgaaaaaccctctgtgtttcacacactctgtcgtgtc
ggttcaggttacaccatgaaagaactgtatgatctgggtttgaaactggccaagcattgg
aagccttttcatagaaaagctccaccaagtagcattttgtgtggaacggagaagcccgag
gtgtacattgaaccttgcaattccgtcattgttcagattaaagcgacagagatcgtctcc
agcgatatgtataaaactggctgcacgttgcgtttcccccgaattgaaaagatcagagaa
gacaaagagtggtacgaatgtaccaccctggatgacttggaacaacttcgagggaaagca
tctggaaagcttgcgtctaaacacctttttgtcgctggcgatgatgaaccacaggagaag
aggcggaaagctgccccaaagatgaagaaagttattgggattatcgagcatttgaaagca
cctaacctttctaatgtaaacaaagtttctaatatatttgaagacgtggagttttgtgtt
atgagcggaacagacagccatccaaagcccgacctggagaacagacttgcagaattcggt
ggttatatagtacaaaacccaggcccggacacctactgtgtgattgcagggtccgagaac
atcagagtgaaaaacatcatttcttcagataaacatgatgttgtcaggcctgagtggctg
ttagagtgttttaggaccaaacgctgtgtgccctggcagcctcgctttatgattcatatg
tgcccatcgacaagggagcattttgcccgtgaatatgatcgttacggtgacagttacttc
actgatgcagatttgaaccaactgaaagaagtgttctcagcaatgaaaaattccggtgaa
ctaagtcctggagaagtagcttccgcgattgctaatttagaatatcggtactcctgggac
cgctccccgctcagtatgtttcgacatcacattatttacttggacttgtatgctgttatt
aacgacgtgagtaccaaaatcgaggggacaaggttagctttcacagctttggagcttcga
tttcacggagcaaaagtagtttctagtttagctcagggagtgtcccacgtaatcattggg
gaggatcgtagccgtgttgcagatttgaaagcttttcgaagaactcttaagagaaagttt
aagatcctgcaacaagattgggtcactgattcaatagacaagtctgagttgcaagaggaa
aatcaatacttggtttaa
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integrated database retrieval system
