Hyaena hyaena (striped hyena): 120229242
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Entry
120229242 CDS
T07257
Symbol
UPF1
Name
(RefSeq) regulator of nonsense transcripts 1 isoform X1
KO
K14326
regulator of nonsense transcripts 1 [EC:
5.6.2.5
5.6.2.3
]
Organism
hhv
Hyaena hyaena (striped hyena)
Pathway
hhv03013
Nucleocytoplasmic transport
hhv03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
hhv00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
120229242 (UPF1)
03015 mRNA surveillance pathway
120229242 (UPF1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
hhv03019
]
120229242 (UPF1)
Enzymes [BR:
hhv01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
120229242 (UPF1)
5.6.2.5 RNA 5'-3' helicase
120229242 (UPF1)
Messenger RNA biogenesis [BR:
hhv03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
120229242 (UPF1)
mRNA cycle factors
Common to processing body (P body) and stress granule
120229242 (UPF1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
UPF1_Zn_bind
AAA_12
AAA_11
UPF1_1B_dom
AAA_30
AAA_19
ResIII
SLFN-g3_helicase
ATPase
nSTAND3
Helicase_RecD
DEAD
AAA_16
UvrD-helicase
SRP54
UvrD_C_2
AAA_22
Motif
Other DBs
NCBI-GeneID:
120229242
NCBI-ProteinID:
XP_039084010
LinkDB
All DBs
Position
Unknown
AA seq
1130 aa
AA seq
DB search
MSVEAYGPSSQTLTFLDTEEAELLGADTQGSEFEFTDFTLPSQTQTPPGGPGGPGGGGAG
GPVGAGAGAAAGQLDAQVGGPEGILQNGAVDDNVAKTSQLLAELNFEEDEEDTYYTKDLP
VHACSYCGIHDPACVVYCNTSKKWFCNGRGNTSGSHIVNHLVRAKCKEVTLHKDGPLGET
VLECYNCGCRNVFLLGFIPAKADSVVVLLCRQPCASQSSLKDINWDSSQWQPLIQDRCFL
SWLVKIPSEQEQLRARQITAQQINKLEELWKENPSATLEDLEKPGVDEEPQHVLLRYEDA
YQYQNIFGPLVKLEADYDKKLKESQTQDNITVRWDLGLNKKRIAYFTLPKTDSGNEDLVI
IWLRDMRLMQGDEICLRYKGDLAPLWKGIGHVIKVPDNYGDEIAIELRSSVGAPVEVTHN
FQVDFVWKSTSFDRMQSALKTFAVDETSVSGYIYHKLLGHEVEDVIIKCQLPKRFTAQGL
PDLNHSQVYAVKTVLQRPLSLIQGPPGTGKTVTSATIVYHLARQGNGPVLVCAPSNIAVD
QLTEKIHQTGLKVVRLCAKSREAIDSPVSFLALHNQIRNMDSMPELQKLQQLKDETGELS
SADEKRYRALKRTAERELLMNADVICCTCVGAGDPRLAKMQFRSILIDESTQATEPECMV
PVVLGAKQLILVGDHCQLGPVVMCKKAAKAGLSQSLFERLVVLGIRPIRLQVQYRMHPAL
SAFPSNIFYEGSLQNGVTAADRVKKGFDFQWPQPDKPMFFYVTQGQEEIASSGTSYLNRT
EAANVEKITTKLLKAGAKPDQIGIITPYEGQRSYLVQYMQFSGSLHTKLYQEVEIASVDA
FQGREKDFIILSCVRANEHQGIGFLNDPRRLNVALTRARYGVIIVGNPKALSKQPLWNHL
LNYYKEQKVLVEGPLNNLRESLMQFSKPRKLVNTINPGARFMTTAMYDAREAIIPGSVYD
RSSQGRPSNMYFQTHDQIGMISAGPSHVAAMNIPIPFNLVMPPMPPPGYFGQANGPAAGR
GTPKGKTGRGGRQKNRFGLPGPSQTNLPNSQASQDVASQPFSQGALTQGYISMSQPSQMS
QPGLSQPELSQDSYLGDEFKSQIDVALSQDSTYQGERAYQHGGVTGLSQY
NT seq
3393 nt
NT seq
+upstream
nt +downstream
nt
atgagtgtggaggcgtacgggcccagttcgcagacccttaccttcctggacactgaggaa
gccgagctgcttggcgccgacacacagggctcggagttcgagttcaccgatttcaccctc
cccagccagacgcagacgcccccgggtggccccggcggccccggaggaggtggcgcgggc
ggcccggtcggcgctggggcgggcgctgcggccggacagctggacgcgcaggtcggggga
ccggagggcattttgcagaatggggctgtggatgacaatgtggccaagaccagccagttg
ttggccgagttgaacttcgaagaagatgaagaagatacctactacacgaaggatctccct
gtacacgcctgcagttactgcggaatacacgatcctgcttgcgtggtttactgtaatacc
agcaagaagtggttctgtaatggacgtggaaatacttctggcagccacattgtaaatcac
ctcgtgagggcaaaatgcaaagaggtgactctgcacaaggatgggcccctgggggagaca
gttctggagtgttacaactgtggctgccgcaatgtcttcctcctcggcttcatccctgcc
aaagcggactccgtggtggtgctgctgtgcaggcagccctgtgccagtcagagcagcctc
aaggacatcaactgggacagctcccagtggcagcccctgatccaggaccgctgcttcctc
tcttggctggtcaagatcccttctgagcaagagcagctgcgggcccggcagatcactgct
cagcagatcaacaagctggaggagctctggaaggagaatccttctgccaccttggaggat
ctggagaagcccggtgtggacgaggagccgcagcacgtcctcttgcggtacgaggacgcc
taccagtaccagaacatattcggccctctggtcaagctggaggccgactacgataagaaa
ctgaaagagtcccagactcaagataacatcacggtcaggtgggacctgggccttaacaag
aagagaatcgcctacttcactttgcccaagactgactctggtaatgaggatttagtcata
atttggttaagagatatgcggctcatgcagggagatgagatatgcctgcggtacaagggg
gatctggcacccctgtggaaagggatcggccacgtcatcaaggtccctgataattatggc
gatgagatcgccattgagcttcggagcagtgtgggcgcccctgtggaggtgactcataat
ttccaggtggatttcgtatggaagtcaacctcatttgataggatgcagagtgctttgaag
acgtttgccgtggatgagacctctgtgtcgggctacatctaccacaaactgcttggccac
gaggtggaggatgtgatcatcaagtgccagctgccgaagcgcttcacggcccaggggctc
ccagacctcaaccactctcaggtttacgccgtgaagactgtgctgcagagaccactgagc
ctgattcaggggccaccaggcacggggaagaccgtgacctctgccaccatcgtctaccac
ctggctcggcaaggcaatgggcctgtgctcgtctgtgctccgagcaacatagctgtggat
cagctgactgagaagatccaccagactgggctgaaagtcgtgcggctctgtgcgaagagc
cgcgaggccatcgactccccggtgtcgttcctggccctgcacaaccagatcaggaacatg
gatagcatgccagagctacagaagctgcagcagctgaaggacgagactggggagctgtcc
tctgccgatgagaagcgctaccgggccctgaagcgcactgctgagcgggagctgctcatg
aatgcagatgtcatctgctgcacatgtgtgggtgcaggggacccgaggcttgccaagatg
cagttccgctccatcctaattgacgagagcacccaggccactgaaccagagtgcatggtc
cctgtggttcttggcgccaagcagctcatcctcgtgggcgaccactgccagctgggcccc
gtggtgatgtgcaagaaggccgccaaggctggactgtcccagtcactctttgagcggctg
gtagtgctgggcatccgtcccatccgcctccaggtccagtatcggatgcaccctgcgctc
agtgccttcccgtccaacatcttctacgagggctctctccagaacggcgtcaccgcagcg
gatcgagtgaagaaggggtttgacttccagtggccccagcctgataagccaatgttcttc
tacgtgacccagggccaagaggagatcgccagctcaggcacctcctacctgaacaggacg
gaagctgcaaatgtggagaaaatcaccacgaagctgctaaaggcaggtgccaagcctgac
cagatcgggatcatcacaccttacgagggccagcgctcttacctggtgcagtacatgcag
ttcagcggctccctgcacaccaagctctaccaggaggtggagattgccagtgtggacgcg
ttccaggggcgagagaaggatttcatcatcctttcctgtgtgcgagccaacgagcaccaa
ggcattgggtttttaaatgaccccaggcggcttaatgtggccctgaccagggcaaggtat
ggggtcattatcgtgggcaacccaaaggccctgtctaagcagccgctctggaaccacttg
ctgaactactacaaggagcagaaggttctggtggaggggcccctgaacaaccttcgggag
agcctcatgcagttcagcaagcccaggaagctggtcaacaccatcaacccgggagcccgg
ttcatgacaacagccatgtatgatgctcgggaggccattatcccaggatcagtctatgac
cggagcagccagggccggccctcaaacatgtacttccagacccacgaccagatcggcatg
atcagtgcgggccccagccacgtggctgccatgaacattcccatccctttcaacctggtc
atgccacccatgccaccaccagggtattttggacaagccaatgggccagccgcaggccgg
ggtaccccaaaaggcaagactggtcgtggggggcgccagaagaaccgctttgggctccct
ggacccagccagacgaatctccccaacagccaagccagccaggatgtggcctcccagccc
ttctcccagggcgccctgacacagggctacatctccatgagccagccctcccagatgagc
cagcccggcctctctcagcccgagctgtcccaggacagttaccttggcgatgagtttaag
tcacagattgatgtggcgctgtcgcaagactccacataccaaggggagcgggcctaccag
cacggcggagtgacagggctgtcccagtactag
DBGET
integrated database retrieval system
