Heterobasidion irregulare: HETIRDRAFT_382796
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Entry
HETIRDRAFT_382796 CDS
T03455
Name
(RefSeq) hypothetical protein
KO
K03144
transcription initiation factor TFIIH subunit 4
Organism
hir
Heterobasidion irregulare
Pathway
hir03022
Basal transcription factors
hir03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
hir00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
HETIRDRAFT_382796
09124 Replication and repair
03420 Nucleotide excision repair
HETIRDRAFT_382796
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
hir03021
]
HETIRDRAFT_382796
03400 DNA repair and recombination proteins [BR:
hir03400
]
HETIRDRAFT_382796
Transcription machinery [BR:
hir03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIH
HETIRDRAFT_382796
DNA repair and recombination proteins [BR:
hir03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TFIIH complex
HETIRDRAFT_382796
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Tfb2
Tfb2_C
Helicase_C_3
Motif
Other DBs
NCBI-GeneID:
20672136
NCBI-ProteinID:
XP_009545085
JGI:
Hetan2_382796
UniProt:
W4KAI4
LinkDB
All DBs
Position
Unknown
AA seq
473 aa
AA seq
DB search
MPVVVESDQSSSSDDHRPHALLSFLHSQSQNSLTRLYHRPSSCLSIFRLLGPLERQIIMN
LLWLESSIPILTMSSWVVDAKTKPYDGAITTLANLHILPSPSAKLGLNPTFKTSMRQAIT
GGGNSGSFGVPAELDEKRQSPSIEALDTYALERWETILHYMVSSGTGQAPTRPSQGVLYL
LQRSGLMAMQSGSQLQITSSGFQFLLHTPHAQLWDLLLQYLEMVEERQMDLVEVISFLFM
LSTMELGREYSTESLSETQKAMLEDLRDYGLIWQRKAISRRFSPTRLATTLTSSLPPLPT
ASGTGTGPRGQAQGFIILETNYRLYAYTNNPLQTAVLNLFVSMKSRFPNLVVGSITRESV
RKALANGITADQIISYLTTYAHLQMRKNKPLLPVTVQDQIRLWELERNRVKSQEGYLYTA
FASQADYEYVLNYAKQLDIVIWENAAKRCFFGSLEGHANIRGFIERRTRGEIG
NT seq
1422 nt
NT seq
+upstream
nt +downstream
nt
atgcccgtcgtcgtcgaatcagatcaatccagctccagcgatgaccaccgtccacatgct
ttgctatcgtttctccattcacagtcccagaactcgctgacacgtctgtaccaccgacca
tcatcatgcttgtccatatttcgccttttaggacctttagaacgtcagattatcatgaac
ttgctatggcttgagtcttccatccctatattgaccatgtcatcctgggtcgttgatgct
aaaacaaaaccttatgatggcgccataacgaccctggccaatttgcacattcttcccagt
ccatccgctaaactgggtctcaatccgactttcaagacaagcatgcgacaagccatcaca
ggaggtgggaatagtggaagttttggggttcctgccgaattagatgaaaaacggcaatcc
cccagcatcgaggctctagacacatacgcgctggagcgctgggagactattttgcattac
atggtatcctcgggcacagggcaagctcctacgagaccatcgcagggagttctatacctc
cttcaacggagtggcctgatggccatgcagtcaggatcgcaattgcagataacctcctca
ggtttccaattccttttacatacaccccacgcccagctatgggaccttttgctccagtac
ttggagatggttgaagaaagacagatggatcttgtggaagttatcagttttctattcatg
ctgtctacaatggaacttggccgcgaatattcgacggagagcctgagcgaaactcagaag
gccatgttggaggatctccgggattatggtctcatatggcagcgcaaggccatatcccgg
cgcttcagcccaacgcgattagcgactactttgacgtcctcgctacctcctcttcccact
gcttcgggtacggggacagggccaaggggccaggctcaaggtttcattatcctcgagaca
aattaccgtctgtatgcatacacgaacaacccattgcagacagctgtcctcaacctgttc
gtgagcatgaaatcgcgcttcccgaacctcgttgtgggttctattacgcgtgagagcgtg
cggaaggcccttgccaacggcataaccgctgatcagattatcagttacctcacgacttac
gcacacctccagatgcgcaagaacaaacccttacttcctgttacagttcaagatcagatc
cggctttgggagctagagcggaacagagtaaaatcgcaggaaggatatttatacacggca
tttgcctctcaggcggactatgagtatgtgctgaactatgcaaaacaactcgacatcgtg
atttgggagaacgctgccaagcgctgcttctttggcagcctagagggacacgcaaacatc
cgcggattcatcgagcggcggacacgaggagagatcggctga
DBGET
integrated database retrieval system
