Heterobasidion irregulare: HETIRDRAFT_67679
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Entry
HETIRDRAFT_67679 CDS
T03455
Name
(RefSeq) hypothetical protein
KO
K12598
ATP-dependent RNA helicase DOB1 [EC:
5.6.2.6
]
Organism
hir
Heterobasidion irregulare
Pathway
hir03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
hir00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
HETIRDRAFT_67679
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
hir03019
]
HETIRDRAFT_67679
03041 Spliceosome [BR:
hir03041
]
HETIRDRAFT_67679
03009 Ribosome biogenesis [BR:
hir03009
]
HETIRDRAFT_67679
03016 Transfer RNA biogenesis [BR:
hir03016
]
HETIRDRAFT_67679
Enzymes [BR:
hir01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
HETIRDRAFT_67679
Messenger RNA biogenesis [BR:
hir03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
TRAMP complex
HETIRDRAFT_67679
Spliceosome [BR:
hir03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
HETIRDRAFT_67679
Complex C
U4/U6.U5 tri-SnRNP related factors
HETIRDRAFT_67679
Ribosome biogenesis [BR:
hir03009
]
Eukaryotic type
Pre-60S particles
Helicases
HETIRDRAFT_67679
Transfer RNA biogenesis [BR:
hir03016
]
Eukaryotic type
tRNA degradation factors
TRAMP complex
HETIRDRAFT_67679
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
MTR4_beta-barrel
DSHCT
DEAD
MTR4-like_stalk
Helicase_C
ResIII
nSTAND3
AAA_22
Motif
Other DBs
NCBI-GeneID:
20678819
NCBI-ProteinID:
XP_009552520
JGI:
Hetan2_67679
UniProt:
W4JPG4
LinkDB
All DBs
Position
Unknown
AA seq
1060 aa
AA seq
DB search
MDVDAPASPNRAATPETKKRKAERSNGHAPSSIENEGVEGSATKKRRVEPSYQPVVVDEF
ETEAKREVIASAGLTESADAVGSRLELKHQVRHQVAVPPGYDYIPISKHVPPAKPAREYK
FTLDPFQQVSIYAIQRNESVLVSAHTSAGKTVVAEYAIAQALQNKQRVIYTSPIKALSNQ
KYREMEAEFGDVGLMTGDVTRNPTASCLVMTTEILRSMLYRGSEIMREVAWVIFDEIHYM
RDKERGVVWEETIILLPHSVRYVFLSATIPNAMQFCEWIVKSHEQPCHVVYTDFRPTPLQ
HYLFPAGGQGIYLVVNEKGEFREDNFSKAMGMLQEKMGEDPADSKSGAGRKGKSKKGGEK
KGEYADVSHSGPSDISKIINMIMKKNFNPVIVFAFSKRECESLALQVAKTEHNTAEEQDS
VEKIFTNAIAGLSPDDRGLPQIANILPLLKRGIGIHHGGLLPILKEVIEILFQEGLIKVL
FATETFSIGLNMPAKTVVFTAARKFDGHEFRDLSSGEYIQMSGRAGRRGLDDRGVVIMMC
DERLEPTAAKNMVKGEADRLDSAFHLGYNMVLNLMKIEVISPEYMLERCFFQFQSSAGVP
ILEDQLKKAEDEKSTMIIPDEELVEEYYEYRQQLDQMSADFRDVITHPNYSLPHLKPGRL
VKIKYQDMDFGWGVVINYQKRLPPKNRPTPKAEELPPHEQYIIDVLLNCASGSTAPTQKD
RQNMLATPGGVQPCLPGQKGDPLVVPVLLSTFNAISHLRIYLPKDLRPLSARETVWKSVL
EVQRRCPDGIMLLDPIEDMEIKDEKFKALVKKIQTMEQKMYASPLHKDPRLPELYSQYSQ
KREAQERIRALKKRINATNDVLQLEELKSRKRVLRRLGFTNADDIVDIKGRVACEISTGD
ELLLTELIFNGVFNTLSPEHSAGLLSCFVFAEKSTQPTKLKEELAAPLRVMQEIARRIAK
VSKESKLPVVEEEYVSSFKVELMDAVVQWCRGASFADICKMTDQFEGSLIRVFRRLQELI
RQMTQAAKVIGNSELQQKFEKASEMLERPNSVIFCSSLYL
NT seq
3183 nt
NT seq
+upstream
nt +downstream
nt
atggacgttgatgcacctgcatcaccaaaccgtgctgctacacccgagacgaagaaacgc
aaagcagaacgctcgaatggccatgcaccgtcatcaatagagaatgaaggggtggaaggg
tcggcaacgaaaaagcgacgtgtggagccatcataccagccagtcgtagtggatgagttc
gagacggaggcgaagagagaggtcatagcgagtgctggactaacagagtcggcagatgct
gtgggctcaaggctggagttgaaacatcaggtccgacatcaggtcgctgtccctccagga
tatgactacatcccaatatcgaaacatgtgccacccgcgaagcccgcgcgtgaatacaag
ttcacgttggatcctttccaacaagtttcgatttatgcgattcagcggaatgagagcgta
ctcgtctcggcgcataccagtgcgggaaagaccgtggtggctgagtatgctatcgcccaa
gcattgcagaataagcaaagggttatctatacgagtcctataaaggcactcagtaatcaa
aagtatcgagagatggaggctgagtttggtgatgtcgggctgatgactggagatgtgacc
cgaaatcctacagcatcatgcctagtaatgacgacggagattttacgttccatgctctat
cgtggctccgagatcatgcgagaggtcgcatgggtcatcttcgacgagatccactacatg
cgcgataaggagcgtggcgtcgtttgggaagagactatcatcctcctcccacactctgtg
cgctacgttttcctttccgcgaccattccgaacgcgatgcagttctgcgagtggattgtc
aaatctcacgagcagccatgtcacgtcgtctacactgatttccgcccaacaccgctgcaa
cattatctctttcctgccgggggacaagggatctacctcgtggtgaacgagaagggtgaa
ttcagggaggacaacttctccaaggctatgggtatgctacaggagaagatgggcgaggat
cctgcggattcgaagagcggtgcggggaggaagggtaagtcaaagaaggggggcgaaaag
aaaggtgagtatgctgacgtttcccactcaggtccgtcggacatttcgaagatcatcaac
atgatcatgaaaaagaacttcaacccggttattgtgttcgcgttcagcaaacgtgaatgc
gaatccctcgcgctccaggtagcaaaaacagagcataacacggccgaagagcaagactca
gtcgagaaaatcttcactaatgccatcgccggtctttctccagacgaccgcgggctgcca
cagatagcgaacatacttcctctgctaaaacgcggcataggcattcatcatggcggtctt
ctccctattctcaaagaagtcattgagattctctttcaggagggcctcatcaaggtgctc
ttcgccacggagacattctccatcggtttgaacatgcctgcgaaaaccgtcgtcttcacc
gccgcgcggaaattcgacgggcacgaattccgtgacctatcctctggcgagtacattcag
atgtcagggcgtgctgggcggagaggcttggacgacaggggagtggttatcatgatgtgc
gacgaaaggttggagcctacagctgccaagaacatggtcaagggcgaagcggatcgcttg
gattcagcgttccatctagggtataacatggtgctgaacttgatgaaaattgaggtgatc
agcccggagtacatgctcgagaggtgtttcttccaatttcagagcagtgccggcgtgccg
atcctcgaagaccagttgaaaaaggctgaggacgagaagtcgacgatgatcattcccgac
gaggagcttgtagaggaatactacgagtaccggcaacaattggaccagatgtcggctgat
ttccgagatgtcatcacacatccgaactacagccttccccatcttaagcctggtcgtctc
gtcaaaatcaagtaccaagatatggatttcggctggggcgtggtcatcaactaccagaaa
cgcctgccgccaaaaaaccgacctacacccaaagccgaggaattgcctccacacgagcaa
tatattatcgatgtcttactcaattgcgcttcagggtcgacggctcccacacagaaagac
cgtcagaacatgcttgcaacgccaggaggtgtacaaccctgtctcccggggcagaagggg
gatccacttgtcgtgcccgtgctgctatctacgttcaatgctatcagtcatctaagaata
tacctgccgaaggatctacgaccactgtccgcacgagagactgtgtggaaaagcgtattg
gaagttcaacgacggtgtccggacggaattatgctattggacccaattgaggacatggaa
atcaaggacgagaaattcaaagcactcgtcaagaagatccaaactatggagcaaaagatg
tacgcaagcccactacacaaagatcctcgtctccccgagctttactcgcaatactcgcag
aaacgagaagcgcaggagcgcatccgcgcgctcaagaaacggatcaacgcgaccaacgat
gttttgcagctggaagagctcaagtcacggaagcgcgtgctccggcggttaggatttaca
aatgcggacgacatcgtcgacataaagggccgcgtagcgtgcgaaatcagcacgggcgac
gagttgttactcacggagctgatattcaatggcgtcttcaacacactgtcgcccgagcac
agtgcggggctacttagctgcttcgtatttgcggagaagagtacacagccaaccaaactc
aaggaagagctggctgcacccttgcgtgtaatgcaagaaattgcgcgacggatagccaag
gtgtcgaaagaatccaagctgcccgttgtcgaagaagagtatgtctcctccttcaaagtc
gagctcatggacgctgtcgtgcaatggtgtcgcggcgcttcgttcgccgacatatgcaag
atgacggatcagtttgagggcagtctaatccgcgtgttccggcgactgcaggagctcatc
cgccagatgactcaggcagccaaagtcatcggaaatagtgagctgcagcagaagtttgaa
aaggcatcggagatgctcgaacgcccgaactcggtcatcttctgttcatcattatatctg
taa
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integrated database retrieval system
