Halobiforma lacisalsi: CHINAEXTREME07585
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Entry
CHINAEXTREME07585 CDS
T04669
Name
(GenBank) ribonuclease R
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
hlc
Halobiforma lacisalsi
Pathway
hlc03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
hlc00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
CHINAEXTREME07585
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
hlc03019
]
CHINAEXTREME07585
03016 Transfer RNA biogenesis [BR:
hlc03016
]
CHINAEXTREME07585
Enzymes [BR:
hlc01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
CHINAEXTREME07585
Messenger RNA biogenesis [BR:
hlc03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
CHINAEXTREME07585
Transfer RNA biogenesis [BR:
hlc03016
]
Prokaryotic type
tRNA degradation factors
CHINAEXTREME07585
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
Motif
Other DBs
NCBI-ProteinID:
APW97642
UniProt:
M0LU50
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All DBs
Position
1589789..1591093
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AA seq
434 aa
AA seq
DB search
MSDDADAQAEAGTAEGQGPVEISEDLARHLENKREELFEKFEIPDGFPPEVLEEAEERTD
GVQEEIQEEVDEREDLRDLTTWTTDPIDAQDFDDALSIEEREDEYVLWVHIADVTHYVTP
DTAMWDSAVERSNTVYLPGYTIHMLPPVLAETVCSLVPNEDRLAHTVEMHLDKENLGYES
IDIYKSVIRSDERLTYTQAENRLDDPDAPLHEENKLVHELADRMHEQRKEDGSLVLNPAR
DRAHTIIEECMLKANKAVTHTLMWDRGVEAMYRVHPQPSPDEWSEALQEIQDLDGVSIPG
STWDDPRKAVNATLEEAPARQLDKIQWAVMKVMPRAKYMNDPFGGHHALNFEIYGHFTSP
IRRLSDLINHWIVYKNDVPENLVELCDRASDKQKDAEQCEREYKGFLQEVGLDPTAVNNR
GIEVVDESEAEKTL
NT seq
1305 nt
NT seq
+upstream
nt +downstream
nt
atgagcgacgacgcagacgcacaggccgaagccggtacggccgaaggccagggccccgtc
gagatttccgaggacctcgcgcgccacctcgagaacaaacgcgaggaactgttcgagaag
ttcgagattccggacgggtttccgccggaggtgctcgaggaggccgaggaacgcacggac
ggcgtccaggaagagatccaggaggaggtcgacgaacgcgaggacctccgtgacctgacg
acctggacgaccgacccgatcgacgcacaggacttcgacgacgcgctctcgatcgaagaa
cgcgaggacgagtacgttctctgggtccacatcgccgacgtgacccactacgtcacgccc
gacacggcgatgtgggactcggccgtcgagcggagcaacacggtctacctgccggggtac
acgatccacatgctcccgccggtgctggccgagacggtctgttcgctggtgcccaacgag
gaccgactcgcccacaccgtcgagatgcacctcgacaaggagaacctgggctacgagagc
atcgacatctacaagtcggtcatcaggtccgacgaacggctcacctacacccaggccgag
aaccgactggacgaccccgatgcgccgctgcacgaggagaacaaactcgtccacgaactc
gccgaccggatgcacgaacaacgcaaggaggacggctcgctcgtcctgaatccggcccgc
gaccgcgcccacacgatcatcgaggagtgtatgctgaaggccaacaaggccgtcacgcac
acgctgatgtgggaccgcggcgtcgaggcgatgtaccgggtccacccacagccgagcccc
gacgagtggtccgaagccctccaggagattcaggacttagacggcgtgtcgatccccggc
agcacgtgggacgacccccggaaggctgtcaacgcgacgctcgaggaggcaccggcccgg
caactcgacaagatccagtgggccgtgatgaaggtgatgccccgcgcgaagtacatgaac
gacccgttcgggggccaccacgcgctgaacttcgagatctacggccacttcacgagtccg
atccgccgactctcggacctgatcaaccactggatcgtctacaagaacgacgttcccgag
aacctcgtagaactgtgcgatcgggcgagcgacaagcagaaagacgccgagcagtgcgaa
cgcgagtacaagggattcctccaggaggtcggcctcgatccgacggcggtcaacaaccgc
gggatcgaggtcgtcgacgagagcgaggccgagaagacgctgtag
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