KEGG   Halobiforma lacisalsi: CHINAEXTREME12825
Entry
CHINAEXTREME12825 CDS       T04669                                 
Name
(GenBank) DNA ligase
  KO
K10747  DNA ligase 1 [EC:6.5.1.1 6.5.1.6 6.5.1.7]
Organism
hlc  Halobiforma lacisalsi
Pathway
hlc03030  DNA replication
hlc03410  Base excision repair
hlc03420  Nucleotide excision repair
hlc03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:hlc00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    CHINAEXTREME12825
   03410 Base excision repair
    CHINAEXTREME12825
   03420 Nucleotide excision repair
    CHINAEXTREME12825
   03430 Mismatch repair
    CHINAEXTREME12825
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:hlc03032]
    CHINAEXTREME12825
   03400 DNA repair and recombination proteins [BR:hlc03400]
    CHINAEXTREME12825
Enzymes [BR:hlc01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     CHINAEXTREME12825
    6.5.1.6  DNA ligase (ATP or NAD+)
     CHINAEXTREME12825
    6.5.1.7  DNA ligase (ATP, ADP or GTP)
     CHINAEXTREME12825
DNA replication proteins [BR:hlc03032]
 Eukaryotic type
  DNA Replication Elongation Factors
   Other elongation factors
    CHINAEXTREME12825
 Prokaryotic type
   Elongation factors (archaeal)
    Other elongation factors
     CHINAEXTREME12825
DNA repair and recombination proteins [BR:hlc03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    Long Patch-BER factors
     CHINAEXTREME12825
   NER (nucleotide excision repair)
    Other NER factors
     CHINAEXTREME12825
   MMR (mismatch excision repair)
    Other MMR factors
     CHINAEXTREME12825
SSDB
Motif
Pfam: DNA_ligase_A_M DNA_ligase_A_N DNA_ligase_A_C
Other DBs
NCBI-ProteinID: APW98607
UniProt: M0LHB1
LinkDB
Position
2657512..2659269
AA seq 585 aa
MEFATFADRAAAIEAEPADLEIVAHVRDLLEDAGDAENGADDRIATVEIVARFVQGRVFP
AWDSTTLDIGPSACYEAIARAAGQNVDADDVEERLADVGEIGDVAASYDFGGQRGLDAFA
AGDGGSGDDDLTVREVHDELVDLAAAEGEGSEDRKVDILFGLFNRCSSDEARYLARLVLS
EMRIGVGEGTVRDAVAAAFEVPEERVERALQVSNDYGEVARVARDEGLEGLDAMELAVGR
PVQAMLAQAGTVTDALEEWEEAAVEWKYDGARIQLHHDPDGLESAAGEDDDATTRLFSRN
MEDVTGALPEIVEFAEGTLEGPAILDGEVVAVDDAGNPLRFQEVLKRFRRKHDVAKARED
VAVRPVFFDCLHADGDDLLEEPLTARHDRLEGVLRDDPQQDPDDVDGLSLLWLADDPDEI
ESIDAEALEAGHEGIMLKNPDSAYSPGRRGKNWRKRKPDVETLDCVVTGAEWGEGRRATF
LGTFELSVRDEATGDLETVGKVATGITDEKLADLTELLEPHIAAEEGQVVDLEPAVVFEV
GYEEIQTSPTYSSGYALRFPRFQAVRDDKSPEDADTLERVERLRS
NT seq 1758 nt   +upstreamnt  +downstreamnt
atggagttcgccacgttcgccgaccgagccgccgcgatcgaagccgaacccgcggatcta
gagatcgtcgctcacgtgcgggacctcctcgaggacgcaggagacgccgagaacggagcc
gacgaccgaatcgcgaccgtcgagatcgtcgcccgcttcgtccagggacgggtgttcccg
gcgtgggactcgaccaccctcgatatcggacccagcgcctgctacgaggcgatcgcccgc
gccgccgggcagaacgtcgacgccgacgacgtcgaggagcgcctcgccgacgtgggcgag
atcggcgacgtggccgcgagctacgacttcggcggccagcgcggactggacgccttcgcc
gccggcgacgggggcagcggcgacgacgacctcaccgtgcgcgaggtccacgacgaactc
gtcgacctcgccgccgccgagggcgagggcagcgaggaccgcaaggtcgacatcctcttc
gggctgttcaaccgctgctcgagcgacgaggcccggtatctcgcccgcctcgtcctctcg
gagatgcggatcggcgtcggcgagggcaccgtccgcgacgccgtcgccgcggccttcgag
gtccccgaggagcgcgtcgagcgggccctgcaagtctcgaacgactacggcgaggtcgcc
cgcgtcgcccgcgacgaagggctcgaggggctggacgcgatggaactggccgtcggccgg
cccgtgcaggcgatgctcgcccaggccgggaccgtgaccgacgccctggaggagtgggag
gaagccgccgtcgagtggaagtacgacggcgcgcggatccagttgcaccacgacccggac
ggcctcgagtcggccgccggtgaggacgacgacgcgacgacccgcctcttctcccggaac
atggaggacgtcaccggcgcgctccccgagatcgtcgagttcgccgaggggacgctcgag
ggaccggccatcctggacggcgaggtcgtcgcagtcgacgacgcgggcaaccccctccgg
ttccaggaggtcctcaagcggttccgccggaaacacgacgtcgcgaaggcccgcgaggac
gtcgccgtccgaccggtgttcttcgactgtctgcacgccgacggcgacgacctgctcgag
gagcccctgaccgcgagacacgaccgactcgagggggtgctgcgcgacgatccgcagcag
gaccccgacgacgtcgacggcctctccctgctgtggctcgccgacgaccccgacgagatc
gagtcgatcgacgccgaggcgctcgaggccggccacgaggggatcatgctcaagaacccc
gactccgcgtactcgcccggccgacgcgggaagaactggcgcaagcgcaagcccgacgtg
gagacgctcgactgcgtggtgacgggtgcggagtggggcgaaggacgacgggcgactttc
ctcggcaccttcgaactctccgtgcgcgacgaggcgacgggcgacctggaaaccgtcggc
aaggtcgcgaccgggatcaccgacgagaaactggccgacctgacggagttactcgagcca
cacatcgccgcggaggagggccaggtggtcgacctcgagcccgccgtcgtcttcgaggtc
ggctacgaagagatccagacctcgccgacgtattcgtcgggctacgcgctgcggttcccg
cggttccaggcagtacgagacgacaaatcacccgaggacgcggacacgctcgagcgcgtc
gagcggttgcggtcgtag

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