Haliaeetus leucocephalus (bald eagle): 104829138
Help
Entry
104829138 CDS
T08630
Symbol
UPF1
Name
(RefSeq) regulator of nonsense transcripts 1 isoform X1
KO
K14326
regulator of nonsense transcripts 1 [EC:
5.6.2.5
5.6.2.3
]
Organism
hle
Haliaeetus leucocephalus (bald eagle)
Pathway
hle03013
Nucleocytoplasmic transport
hle03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
hle00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
104829138 (UPF1)
03015 mRNA surveillance pathway
104829138 (UPF1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
hle03019
]
104829138 (UPF1)
Enzymes [BR:
hle01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
104829138 (UPF1)
5.6.2.5 RNA 5'-3' helicase
104829138 (UPF1)
Messenger RNA biogenesis [BR:
hle03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
104829138 (UPF1)
mRNA cycle factors
Common to processing body (P body) and stress granule
104829138 (UPF1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
UPF1_Zn_bind
AAA_12
AAA_11
UPF1_1B_dom
AAA_30
AAA_19
ResIII
SLFN-g3_helicase
ATPase
nSTAND3
DEAD
Helicase_RecD
AAA_16
UvrD-helicase
SRP54
UvrD_C_2
AAA_22
Motif
Other DBs
NCBI-GeneID:
104829138
NCBI-ProteinID:
XP_010561546
LinkDB
All DBs
Position
Unknown
AA seq
1066 aa
AA seq
DB search
MFWSLCSLYNLSTDLVFQVNGPDGILQNGAVDDNVAKTSQLLAELNFEEDEEDTYYTKDL
PVHACSYCGIHDPACVVYCNTSKKWFCNGRGNTSGSHIVNHLVRAKCKEVTLHKDGPLGE
TVLECYNCGCRNVFLLGFIPAKADSVVVLLCRLCRQPCASQSSLKDINWDSSQWQPLIQD
RCFLSWLVKIPSEQEQLRARQITAQQINKLEELWKENPSATLEDLEKPGVDEEPQHVLLR
YEDAYQYQNIFGPLVKLEADYDKKLKESQTQDNITVRWDLGLNKKRIAYFTLPKTDSDMR
LMQGDEICLRYKGDLAPLWKGIGHVIKVPDSSTDYGDEIAIELRSSVGAPVEVTHNFQVD
FVWKSTSFDRMQSALKTFAVDETSVSGYIYHKLLGHEVEDVIIKCQLPKRFTAQGLPDLN
HSQVYAVKTVLQRPLSLIQGPPGTGKTVTSATIVYHLARQGNGPVLVCAPSNIAVDQLTE
KIHQTGLKVVRLCAKSREAIDSPVSFLALHNQIRNMDSMPELQKLQQLKDETGELSSADE
KRYRALKRTAERELLMNADVICCTCVGAGDPRLAKMQFRSILIDESTQATEPECMVPVVL
GAKQLILVGDHCQLGPVVMCKKAAKAGLSQSLFERLVVLGIRPIRLQVQYRMHPALSAFP
SNIFYEGSLQNGVTAADRVKKGFDFQWPQPDKPMFFYVTQGQEEIASSGTSYLNRTEAAN
VEKITTKLLKAGAKPDQIGIITPYEGQRSYLVQYMQFSGSLHTKLYQEVEIASVDAFQGR
EKDFIILSCVRANEHQGIGFLNDPRRLNVALTRARYGVIIVGNPKALSKQPLWNHLLNYY
KEQKVLVEGPLNNLRESLMQFSKPRKLVNTINPGARFMTTAMYDAREAIIPGSVYDRSSQ
GRPSNMYFQTHDQIGMISAGPSHVAAMNIPIPFNLVMPPMPPPGYFGQANGPAAGRGAPK
GKTGRGGRQKNRFGIPGTSQSNLPNSQASQDVVSQPFSQGPLTQGYISMSQPSQMSQPGL
SQPELSQDSYLGDEFKSQIDVALSQDSTYQGERAYQHGGVTGLSQY
NT seq
3201 nt
NT seq
+upstream
nt +downstream
nt
atgttttggagtctgtgttcattgtataacttaagcactgacctcgtatttcaggttaat
ggacctgatggcattctacagaatggagctgtggatgataatgtggctaaaaccagccag
cttctggcagaattgaattttgaagaagatgaagaagatacgtattacacaaaggatctt
cctgtgcatgcttgcagttactgtggtatccatgaccctgcttgtgtggtttactgtaac
accagcaaaaagtggttctgtaatgggcgtggaaatacatctggcagccacattgttaat
catcttgtgagagcaaagtgcaaagaggtgactcttcataaagatggacctctaggagag
actgtcttggaatgttataactgtggatgtcgtaatgtgtttctccttggctttattcca
gctaaggcagactctgtggttgttttgctgtgcaggttgtgcaggcagccatgtgccagt
cagagcagtttaaaggatattaattgggacagttcacagtggcagcctcttatccaagat
cgctgtttcctttcgtggctggtaaagattccatctgaacaggaacagttgagggcacgt
cagattacggctcaacagattaacaaactggaagaactttggaaggaaaatccatctgca
acccttgaggacttagaaaagcctggtgttgatgaagagccacagcatgtcctgcttaga
tatgaagatgcttatcaataccaaaatatatttggtcctctagtcaagcttgaggcagac
tatgacaagaaactcaaggagtctcagacccaagataacatcacagtcagatgggacctg
ggcttgaacaagaaaagaattgcttatttcactttgccaaagactgattcagatatgcgt
cttatgcaaggagatgagatctgcttgaggtataaaggagacctggcccctttatggaaa
ggaattggtcatgttatcaaagttcctgatagttctacagattatggtgatgagatagcc
attgaactgaggagcagcgttggagcgcctgtggaagttactcataacttccaagtagat
tttgtatggaagtctacttcatttgacagaatgcagagtgctttaaaaacatttgctgtg
gatgagacttcagtgtctgggtacatctatcacaaactgttaggtcatgaggtagaagat
gtaattattaaatgccagttgccaaagcgctttacagcacaaggacttcctgatctcaac
cattctcaggtttatgctgtgaagactgtcctgcagcgtcctctgagccttattcagggt
ccccctggtaccggaaaaacagtgacatcagccacaattgtctatcatctggctagacag
ggcaatgggcctgtgttagtctgtgctccgagtaatatagctgtagatcagttgactgag
aagatccatcaaactggactgaaagtggttcgtctgtgtgctaaaagtcgtgaggcaatt
gactctcctgtatccttcttggcattgcataaccagatcagaaacatggatagcatgcca
gagcttcagaaactgcagcagcttaaagatgaaactggagaactgtcatctgctgatgag
aaacgttaccgtgcactgaaacgaacagcagagcgtgaattacttatgaatgcagatgtg
atctgttgcacatgtgtgggagctggtgatccaagacttgcaaaaatgcagttccgctcc
attctgattgatgaaagcacacaggctactgagccagagtgcatggtgccagttgtcctg
ggagcaaaacagcttattcttgtgggtgaccactgccagcttggtcctgttgtgatgtgt
aaaaaagctgcaaaggctggcctatctcagtctctcttcgagaggcttgtggtgctgggg
attcgtccaattcgcctgcaagtgcagtatcgcatgcatcctgcacttagtgcttttcca
tccaatatcttctatgagggttcactccagaatggtgttactgcagcggaccgtgtgaaa
aaagggtttgatttccagtggccacagccagataagccaatgtttttctatgttacacaa
ggacaggaggaaattgccagctcaggcacctcttacttaaacaggacggaagctgccaat
gtggagaagataactacaaagctattgaaagctggtgccaaaccagatcagattggcatt
attactccttatgaaggtcaacgatcctatctggtgcagtacatgcaattcagtggttcc
ttgcatacaaagctttaccaggaagtggaaattgcaagtgtggatgccttccagggccga
gagaaggactttattatcctttcttgtgtgagggccaatgaacaccaaggaatagggttt
ctgaatgaccccaggcgtcttaacgtagctcttacaagagcaaggtatggagtaattatt
gttgggaacccaaaagcactgtctaaacaaccactttggaatcacctgctgaattactac
aaggagcagaaggttctggtggagggaccactgaataatctccgggaaagccttatgcag
tttagcaagccccggaaacttgtcaataccatcaacccaggtgcccgtttcatgactact
gccatgtatgatgcacgtgaggctattattccaggatctgtctatgaccggagcagtcaa
gggcgcccatccaacatgtacttccaaacccatgaccagatcgggatgattagtgctggc
cccagccatgtcgctgctatgaacattcctatccctttcaaccttgtgatgccaccgatg
ccaccaccgggatactttggccaggctaacggaccagccgcaggacgtggggcgccaaaa
gggaagactggtcgtggtgggcgccagaaaaatcgttttgggattcctggaactagtcag
tcaaaccttccaaatagtcaagcgagccaagatgtggtgtcccagcctttctcccagggt
ccactgactcaggggtatatctccatgagtcagccatcacagatgagtcagcctgggctc
tcccaaccagaattatcacaggacagttaccttggtgatgagtttaaatctcagattgac
gtggcgctgtcacaggactctacttaccagggtgaacgtgcatatcaacatggtggagtg
acgggactgtcacagtattag
DBGET
integrated database retrieval system
