Halostagnicola larsenii: HALLA_18720
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Entry
HALLA_18720 CDS
T03008
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
hlr
Halostagnicola larsenii
Pathway
hlr03030
DNA replication
hlr03410
Base excision repair
hlr03420
Nucleotide excision repair
hlr03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
hlr00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
HALLA_18720 (ligA)
03410 Base excision repair
HALLA_18720 (ligA)
03420 Nucleotide excision repair
HALLA_18720 (ligA)
03430 Mismatch repair
HALLA_18720 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
hlr03032
]
HALLA_18720 (ligA)
03400 DNA repair and recombination proteins [BR:
hlr03400
]
HALLA_18720 (ligA)
Enzymes [BR:
hlr01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
HALLA_18720 (ligA)
DNA replication proteins [BR:
hlr03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
HALLA_18720 (ligA)
DNA repair and recombination proteins [BR:
hlr03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
HALLA_18720 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
HALLA_18720 (ligA)
MMR (mismatch excision repair)
DNA ligase
HALLA_18720 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
HALLA_18720 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
HHH_5
BRCT
HHH
DNA_ligase_ZBD
5_3_exonuc
RUBY_RBDX
Motif
Other DBs
NCBI-ProteinID:
AHG00520
UniProt:
W0JTF0
LinkDB
All DBs
Position
complement(2590527..2592638)
Genome browser
AA seq
703 aa
AA seq
DB search
MAGADESLDENPYLRDPPTEFTPPEELSEADAAEQVEQLRAAIREHDRRYYVEGDPIIAD
RTYDALFNRLWELEDAFSLSHPDSPTRAVGGEPIDAFETAEHVAPMLSIDQSGEVEDVRE
FDRRVRGELGDADGLDEINYVCEPKFDGVSMEFVYEAGSLVRAVTRGDGREGDDVTRNAR
TIGSVPQKLHGDPPDFLAVRGEVYMPKDAFQAHNRERIERGEEPFANPRNATAGTIRQLD
PAVVADRPLEVFYFDVLAASDLEDTHRDELDRFPELGLRTNDRVETVASIEGAIDYRDRM
LEGRDDLPYEIDGVVIKVDDREARERLGQTARHDRWAFAYKFPARAEVTPVADIAVQVGR
TGRVTPVALLEPVDVGGVTVSRASLHNPDEIAEKNVNVGDTVRVQRAGDVIPYVEEVVEK
GSEGHYELPERCPICDSPIERDGPMAFCTGGLACNAQLRRSIEYYASDAGLDLEGLGEKS
VRQLVEAGLIDSIASLYELEREELTALEGWGETSAENLLSELDDAREPPLADFLSALGIP
HVGPATARELAREFGSFEAFREAVETDPSRLEGVDDVGETVAETIHEFFASEANAEAVDA
VLEHVSPQQAGAGTDSGTELEGLTFVFTGSLEGVTRGEAQETVEAHGANATGSVSGNTDY
LVIGENPGSTKLEDAEDNDVEILEEAAFRDFLESRDLSLPPAN
NT seq
2112 nt
NT seq
+upstream
nt +downstream
nt
atggctggtgcagacgaatctttggacgagaacccctatcttcgggatccgccgacggag
ttcactccccccgaggaactctcggaggcggacgcggccgaacaggtcgagcagttgcgc
gccgcaatccgcgaacacgaccgtcgctactacgtcgagggcgatccgatcatcgccgat
cggacgtacgacgcgctctttaacaggctgtgggaactcgaggacgccttctcgctctca
caccccgacagcccgacgcgggccgtcggcggggagccgatcgacgcgttcgaaaccgcc
gaacacgtcgcgccgatgctctcgatcgaccagagcggcgaggtcgaggacgtacgcgag
ttcgaccgaagggttcgcggcgaactcggcgacgccgacggtctcgacgagatcaactac
gtctgtgagcccaagttcgacggcgtctcgatggagttcgtctacgaagcggggagcctg
gtccgggcggtcacccgcggcgacggccgcgaaggcgacgacgtgacccgcaacgcgcgc
acgatcggctcggtaccgcagaaactccacggcgatccgcccgacttcctcgccgtccga
ggtgaggtctacatgccaaaggacgcgtttcaggcccacaaccgcgagcggatcgaacgc
ggcgaggagcccttcgccaacccgcgcaacgcgacggcggggaccatccgccagctcgat
cctgccgtggtcgcggaccgaccgctcgaggtcttttacttcgacgtgctcgcggcgagc
gacctcgaggacacccaccgggacgaactcgaccggttccccgaactgggcttgcggacg
aacgaccgcgtcgagaccgtcgcgtcgatcgagggagcgatcgattaccgcgaccggatg
ctcgagggccgcgacgacctcccctacgagatcgacggcgtcgtgatcaaggtcgacgac
cgcgaggcccgcgagcgactgggccagacggctcgccacgaccggtgggccttcgcctac
aagttccccgcccgtgcggaggtgaccccggtcgccgacatcgccgtgcaggtcggccgc
acggggcgggtgacgccggtcgcgctcctcgagccggtcgacgtcggcggcgtcaccgtc
tctcgagcgagtctgcacaatcccgacgaaatcgccgaaaagaacgtcaacgtcggcgac
accgtccgcgtccagcgagcgggcgacgtgatcccctacgtcgaggaggtcgtcgagaag
gggagcgagggtcactacgaactccccgagcgctgtccgatctgcgacagcccgatcgaa
cgtgacggcccgatggcgttctgtacgggcgggctggcctgcaacgcccagcttcggcga
tcgatcgagtactacgcgagcgacgccggcctcgatctggagggtctcggcgagaagagc
gtccgccagctggtcgaggcgggtctcatcgattccatcgcctcgctctacgaactcgag
cgcgaggaactgaccgccctcgagggctggggcgagacgagcgccgagaacctgctctcg
gaactcgatgatgctcgcgagccgccgcttgctgacttcctctcggcgctcggcatccct
cacgtcggcccggcgaccgcccgcgaactcgctcgagagttcggctccttcgaggcgttt
cgggaggctgtcgagacggatccgagtcgactcgagggcgtcgacgacgtgggcgagacc
gtcgccgaaacgatccacgagttcttcgcgagcgaggccaacgccgaggcggtcgacgcc
gtgctcgagcacgtctcaccacagcaagcgggcgccggaaccgactccggaaccgaactc
gaggggttgacgttcgtcttcaccgggtcgctcgagggggtcactcgcggcgaggcacag
gagaccgtcgaggcccacggagcgaacgcgaccggaagcgtctcggggaacaccgattat
ctcgttatcggcgagaatccgggttcgacaaagctcgaggacgccgaggacaacgacgtg
gagattctcgaggaagcggcgtttcgggactttctcgagtcacgggatctctccttgcca
cctgcgaactga
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