KEGG   Haloferax larsenii: KU306_12890
Entry
KU306_12890       CDS       T08379                                 
Name
(GenBank) ATP-dependent DNA ligase
  KO
K10747  DNA ligase 1 [EC:6.5.1.1 6.5.1.6 6.5.1.7]
Organism
hls  Haloferax larsenii
Pathway
hls03030  DNA replication
hls03410  Base excision repair
hls03420  Nucleotide excision repair
hls03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:hls00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    KU306_12890
   03410 Base excision repair
    KU306_12890
   03420 Nucleotide excision repair
    KU306_12890
   03430 Mismatch repair
    KU306_12890
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:hls03032]
    KU306_12890
   03400 DNA repair and recombination proteins [BR:hls03400]
    KU306_12890
Enzymes [BR:hls01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     KU306_12890
    6.5.1.6  DNA ligase (ATP or NAD+)
     KU306_12890
    6.5.1.7  DNA ligase (ATP, ADP or GTP)
     KU306_12890
DNA replication proteins [BR:hls03032]
 Eukaryotic type
  DNA Replication Elongation Factors
   Other elongation factors
    KU306_12890
 Prokaryotic type
   Elongation factors (archaeal)
    Other elongation factors
     KU306_12890
DNA repair and recombination proteins [BR:hls03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    Long Patch-BER factors
     KU306_12890
   NER (nucleotide excision repair)
    Other NER factors
     KU306_12890
   MMR (mismatch excision repair)
    Other MMR factors
     KU306_12890
SSDB
Motif
Pfam: DNA_ligase_A_M DNA_ligase_A_N DNA_ligase_A_C RNA_ligase
Other DBs
NCBI-ProteinID: UVE49801
LinkDB
Position
2484468..2486225
AA seq 585 aa
MEFAEFAERAAEIEAESADLTIVSYLADLFRDADDDLATVARFVQGRVFPAWDSTTLDIG
PRLCHEAIARAAGPNVSADDVEDRLAEQGEIGAVAASYDFGGQRGLAAFGAGGQDGLTVA
EVDSELRSLAAASGVGSEDTKLKTLYGLFNRTDPDEARFLARLVLSEMRIGVGEGSVRDA
IAEAFLVADADAAAIRDDDADTDTEAAARERRDENIATVARALQVSNDYGMVAEVARDDG
EAGLDDVHLEVGRPIQAMLAQAGTAADALDEWETAAVETKFDGARVQVHRDESGEVSLFS
RNMEDVTGALPEVVEFVEDAVDCPVILDGEVVAMDDAGDPLPFQEILRRFRRKHDVDQMR
EEVRVELRAFDCLHADGDDLLNAPLTTRHDRLATVLGQDSPAVSDLLLSDDPDEIAGYEA
DALDAGHEGIMLKNPDAAYSPGDRGKNWLKRKPDVETLDLVVTGAEWGEGRRAKFLGTFL
LSARVEDASGDDEFETIGKVATGITDEQLVELTDLLEPEIERESGKEVDIRPSVVFEVGY
EEIQESPTYSSGYALRFPRFVTVREDKTPETADSLTRVERLVESQ
NT seq 1758 nt   +upstreamnt  +downstreamnt
atggagttcgccgagttcgccgagcgcgcggccgaaatcgaagccgagagcgcggacctc
actatcgtctcatatctcgccgacctgtttcgtgatgccgacgacgacctcgcaacggtc
gcccgcttcgtccaagggcgagtgttccccgcgtgggattcgaccacgctggatatcgga
ccacgcctctgtcacgaggccatcgctcgcgccgccgggccaaacgtctctgccgacgac
gtcgaagacagactggccgagcagggcgaaatcggcgcggtcgccgcgagttacgacttc
ggcggccaacgcggtctcgccgccttcggtgcgggcgggcaagacgggctgaccgtcgcc
gaggtcgattccgaacttcgttccctcgccgccgcgtccggggtcgggagcgaagatacg
aagttgaagacgctctacgggctgttcaaccgcaccgaccccgacgaagctcgcttcctc
gcacggctcgtcctctcggagatgcgcatcggcgtcggcgaaggcagcgtccgcgacgcg
attgcagaggcgttcctcgtcgccgacgccgacgcggccgccatccgcgacgacgatgcg
gacacggacaccgaggcggcggcccgcgagcgccgagacgagaacatcgcgactgtcgcc
cgcgccctgcaggtctcgaacgattacggcatggtcgccgaagtcgcccgcgacgacggg
gaagccggtctcgacgatgtccacctcgaagtcggccggccgattcaggcgatgctcgcg
caggcggggaccgccgcagacgccctcgacgagtgggaaaccgccgctgtcgagacgaag
ttcgacggggcgcgcgtgcaggtccaccgcgacgagtccggcgaggtgtcgcttttctcg
cggaacatggaggacgtgacgggcgcactccccgaggtggtcgaattcgtcgaagacgcg
gtcgactgcccggtcatcctcgacggtgaagtcgtcgcgatggacgacgcgggcgacccg
ctgccgtttcaggagattctgcgtcgcttccgccgcaaacacgacgtcgaccagatgcgc
gaggaggtccgggtcgaacttcgggcgttcgactgcctccacgccgacggcgacgacctg
ctgaacgccccgcttacgacccgtcacgaccggcttgcgaccgtcctcggacaggactct
cccgctgtttccgacttgcttctctcggacgaccccgacgaaattgccggctacgaggcg
gacgctctcgacgcgggccacgagggaatcatgctcaagaaccccgacgcggcctactcg
ccgggcgaccgcgggaagaactggctgaagcgcaaacccgacgtggagacgctggacctc
gtcgtcacaggagccgagtggggcgaaggccgccgggcgaagttcctcggcacattcctg
ctttcggcccgcgtcgaggacgcctctggcgacgacgagttcgagacaatcgggaaggtc
gccacgggaatcacagacgagcagttggtcgaactcaccgacctgctcgaacccgaaatc
gaacgcgagtccgggaaagaagtggatatccgcccctcggtcgtcttcgaagtcggctac
gaggagattcaggagtcgccgacgtactcgtctggctacgcgcttcgattcccgcggttc
gtcaccgtccgcgaagacaagacgcccgagacggccgattcgctgacgcgcgtcgaacgg
ttggtcgagtcgcagtaa

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