KEGG   Halobacterium litoreum: LT972_08025
Entry
LT972_08025       CDS       T07867                                 
Name
(GenBank) ATP-dependent DNA ligase
  KO
K10747  DNA ligase 1 [EC:6.5.1.1 6.5.1.6 6.5.1.7]
Organism
hlu  Halobacterium litoreum
Pathway
hlu03030  DNA replication
hlu03410  Base excision repair
hlu03420  Nucleotide excision repair
hlu03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:hlu00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    LT972_08025
   03410 Base excision repair
    LT972_08025
   03420 Nucleotide excision repair
    LT972_08025
   03430 Mismatch repair
    LT972_08025
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:hlu03032]
    LT972_08025
   03400 DNA repair and recombination proteins [BR:hlu03400]
    LT972_08025
Enzymes [BR:hlu01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     LT972_08025
    6.5.1.6  DNA ligase (ATP or NAD+)
     LT972_08025
    6.5.1.7  DNA ligase (ATP, ADP or GTP)
     LT972_08025
DNA replication proteins [BR:hlu03032]
 Eukaryotic type
  DNA Replication Elongation Factors
   Other elongation factors
    LT972_08025
 Prokaryotic type
   Elongation factors (archaeal)
    Other elongation factors
     LT972_08025
DNA repair and recombination proteins [BR:hlu03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    Long Patch-BER factors
     LT972_08025
   NER (nucleotide excision repair)
    Other NER factors
     LT972_08025
   MMR (mismatch excision repair)
    Other MMR factors
     LT972_08025
SSDB
Motif
Pfam: DNA_ligase_A_M DNA_ligase_A_N DNA_ligase_A_C RNA_ligase
Other DBs
NCBI-ProteinID: UHH12103
LinkDB
Position
1458049..1459767
AA seq 572 aa
MKFGSFAARAADIEAEPADLEVVSLVASLLDDADDDLGVVARFVQGRVFPAHSETKLDIG
PRLCYEALARAAGTNVSVGDVESALAESGDIGEVAANLDLGGQAGLGAFASGGGADDLGV
GEVAAELAGLAAAEGDGSQDEKVTLLFGLFNRCSSEEARYLSRLVLGEMRIGVGEGTVRD
AIAEAFGVPEESVKRALQVSNDYGLVAETARDEGVEGLDAMHLEVGRPVQAMLAQAGTVT
DALDEWEEAAVETKFDGARVQVHWDGDDVTLYSRNMEDVTDALPELVEFVEDEVDAPAIL
DGEAVAVSEAGDPLPFQEILKRFRRKHDVEQMREEVRVELHAFDCLHAGVPESGEDSEAR
RTQSDGGEDLLGAPFAQRHERLREVVGDESAVSEILVSEDADEIAAFEERALDAGHEGIM
LKDPEAAYTPGDRGKHWLKRKPDVETLDLVVTGAEWGEGRRASFLGTFLLAARDDETSDF
ETIGKVATGITDEQLADLTDLLEPHVRSEDGQEVDLEPSVVFEVGYEEIQESPTYSSGYA
LRFPRFVSVREDKTPATADAIERVERLAEQQS
NT seq 1719 nt   +upstreamnt  +downstreamnt
atgaagttcggttcgttcgccgcgcgcgccgccgacatcgaggcggagcccgcggacctc
gaagtcgtctcgctggtcgcatccctgctcgacgacgcggacgacgacctcggcgtcgtc
gcgcggttcgtgcaggggcgcgtgttcccggcgcactcggagacgaaactcgacatcggg
ccgcggctctgctacgaggcgctcgcgcgcgccgccggcacgaacgtgagcgtcggcgat
gtggagtccgccctcgcggaatccggtgacatcggcgaggtggcggcgaatctggacctc
ggcgggcaggcgggcctgggcgcgttcgcgtccggcggcggagccgacgacctcggtgtc
ggcgaagtcgcggccgagctcgcgggcctcgcggccgccgagggcgacggcagccaggac
gagaaagtcaccctgctgttcgggctgttcaaccggtgttcgagcgaggaagcccggtac
ctctcccgcctcgtgctcggcgagatgcgtatcggcgtcggcgagggcactgtccgggac
gccatcgccgaggcgttcggcgtgcccgaggagtcggtcaagcgcgcgcttcaggtgtcc
aacgactacggactggtcgcggagacggcccgcgacgagggcgtcgagggactggacgcg
atgcacctggaagtcgggcgccccgtgcaggcgatgctcgcgcaagccggcaccgtcacg
gacgcactcgacgagtgggaggaagccgcggtggagacgaagttcgacggcgcgcgcgtc
caagtccactgggacggcgacgacgtgacgctgtactcccggaacatggaggacgtgacc
gacgcgctccccgaactcgtggagttcgtggaggacgaagtggacgcgcccgcgattctg
gacggcgaggccgtcgccgtctccgaggccggcgacccgctgccgttccaggagattctc
aagcgcttccggcgcaaacacgacgtcgaacagatgcgcgaggaggtgcgcgtcgaactg
cacgcgttcgactgcctgcacgcgggcgtccccgagtccggtgaggactcggaggctcgt
cggacgcagtccgacggcggcgaggacttgctcggcgcgccgttcgcacagcgccacgag
cgactccgcgaggtggtcggcgacgagtcggccgtctccgagattctcgtgtccgaggac
gccgacgagattgcggcgttcgaggagcgcgcactcgacgccgggcacgagggcatcatg
ctgaaagaccccgaggcggcgtacacgcccggcgaccgcgggaaacactggctgaaacgc
aagcccgacgtggagactctcgatttggtggtgacgggcgcggagtggggcgaaggccga
cgcgcgtcgttcctcgggaccttcctgctggcggcgcgcgacgacgagacgagcgacttc
gagaccatcgggaaggtcgccaccggcatcacggacgaacagctcgcggacctcaccgac
ctgctcgaaccccacgtccggagcgaggacggccaggaggtcgacctcgaaccgtcggtc
gtcttcgaggtcggctacgaggagatacaggagtcgccgacctactcctcggggtacgcg
ctccggttcccgcggttcgtctccgtgcgcgaggacaagacgccggcgaccgccgacgcc
atcgagcgcgtcgagcgactcgccgaacagcagtcctga

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