Hyphomicrobium sp. MC1: HYPMC_2433
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Entry
HYPMC_2433 CDS
T01557
Name
(GenBank) DNA polymerase LigD, polymerase domain protein
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
hmc
Hyphomicrobium sp. MC1
Pathway
hmc03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
hmc00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
HYPMC_2433
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
hmc03400
]
HYPMC_2433
Enzymes [BR:
hmc01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
HYPMC_2433
DNA repair and recombination proteins [BR:
hmc03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
HYPMC_2433
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
LigD_N
DNA_primase_S
Motif
Other DBs
NCBI-ProteinID:
CCB65650
UniProt:
F8JHK0
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All DBs
Position
2302423..2304102
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AA seq
559 aa
AA seq
DB search
MAKRKLSEYRAKRDFTKTAEPSGTSVVRPAQHLRFVIQKHDATRLHYDFRLELDGVFKSW
AVTRGPSVDPKDKRLAVEVEDHPLDYGDFEGTIPKGQYGGGTVMLWDRGFWAPVGDKSPE
QQLRDGELKFVLAGEKLKGSWVLVKMKNDRYGGGKRNNWLLIKHKDEGARAGDADKILSQ
DRSVASKRTMTQIAAGEGHGPEPFILRGRRAKRPDAVWHSNASPDDDEPKPAARKKPLKR
TPVRKMRKTGTKSQSDAPSTADKVLGIAISHPEKELWPGGTGEAVSKLDLAHYLETVGEW
MLPHIKGRPCSVIRAPDGIDGQSFFQRHAMRGMSPEIDLVKISGDREPYIEVNSVEGLIA
LGQIAALEFHPWNCAPFEPDVPGRLVFDLDPAPDVDFGRVVVAANELRERLEDVGLVAFC
KTTGGKGIHVVTPLKTRGGAGVGWDEAKAFAGALCQQMAKDSPDAYLIKMTKKLRKGRIF
LDYLRNDRMATAVAPLSPRARPGATVSMPLTWAQVKQGLDPKRFTVHSVPALLKKSSAWK
DYCDSERPLKTAIKKLLGS
NT seq
1680 nt
NT seq
+upstream
nt +downstream
nt
atggcgaagagaaagctttccgaataccgcgccaagcgtgatttcaccaaaacggcggaa
cccagcggcacgtcggtggtccgtccggcgcagcatttgcgtttcgtcattcagaaacac
gacgcgacacggctgcattatgacttccggctagaactcgacggcgtgttcaaatcgtgg
gccgtgacgcgcggtccctccgtcgatccgaaagataagcgccttgccgtcgaggtcgaa
gatcatccgctcgactacggcgatttcgaaggcaccattcccaaaggtcaatatggcggc
ggcaccgtgatgctgtgggaccgcggtttctgggcgccggtcggagacaagagcccagaa
caacaactgcgcgacggcgaattgaaattcgtgctcgcaggcgagaagctcaaaggcagc
tgggtactcgtcaaaatgaaaaacgatcgctacggcggcggcaagcgcaataactggctg
ctcatcaagcataaggacgaaggcgcgcgcgcgggtgacgccgacaagatcctgtcgcag
gatcgctccgtcgcctcgaagcggacgatgacgcagatcgcagcgggcgaaggccatgga
cccgaacctttcattcttcgcgggcggcgcgccaagcggcccgatgcggtctggcattcg
aacgcatcaccggatgacgatgagcctaagcctgcagcccgaaagaaaccgctgaaacgg
acacccgttcgcaagatgcgcaagacaggaaccaagtcgcaatcggatgcgccgtcaacc
gccgacaaagtgctcggcatcgcgatctctcacccagagaaagagctttggcccggcggc
acgggcgaggccgtcagcaagctcgatcttgcgcattatctagaaacggtcggtgagtgg
atgctgcctcatatcaaggggcggccctgctccgtcattcgcgcgcccgacggcatcgac
gggcagagcttctttcagcgtcacgccatgcgcgggatgtcgccggaaatcgacctcgtg
aaaatatcgggcgatcgcgagccttatattgaagtcaattcggtggaaggcctgatcgcg
ctcggccagatcgcagcgctcgaatttcatccgtggaactgcgctccgttcgaacccgat
gttccggggcggctcgtgttcgatctcgatccggcgccggatgtcgatttcggccgcgtt
gtcgtggcggccaacgaactgcgcgagcggctcgaagatgtcggtcttgtcgcattctgc
aagaccactggcggcaagggaattcacgtcgtgacgcccctgaagacacgcggcggcgcg
ggcgtggggtgggacgaagctaaagcgttcgcgggcgccttgtgccaacagatggccaag
gacagccccgacgcctatctcatcaagatgaccaagaagctgcgcaagggccgcattttt
ctggattacctgcgcaatgatcgcatggcgactgccgttgcaccattgtctccgcgtgcg
cggccaggggcgaccgtgtcgatgccgctgacgtgggcgcaagtgaaacaagggctcgat
cccaaacgcttcaccgtgcacagcgtacctgcgctcctcaaaaaatcatccgcatggaag
gactattgcgacagcgagcggccgctgaagaccgcgatcaagaaacttctaggatcgtga
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