Hydra vulgaris (swiftwater hydra): 100203524
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Entry
100203524 CDS
T01080
Name
(RefSeq) regulator of nonsense transcripts 1
KO
K14326
regulator of nonsense transcripts 1 [EC:
5.6.2.5
5.6.2.3
]
Organism
hmg
Hydra vulgaris (swiftwater hydra)
Pathway
hmg03013
Nucleocytoplasmic transport
hmg03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
hmg00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
100203524
03015 mRNA surveillance pathway
100203524
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
hmg03019
]
100203524
Enzymes [BR:
hmg01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
100203524
5.6.2.5 RNA 5'-3' helicase
100203524
Messenger RNA biogenesis [BR:
hmg03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
100203524
mRNA cycle factors
Common to processing body (P body) and stress granule
100203524
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UPF1_Zn_bind
AAA_12
AAA_11
UPF1_1B_dom
AAA_30
AAA_19
ResIII
UvrD-helicase
nSTAND3
Helicase_RecD
AAA_16
DEAD
SLFN-g3_helicase
ATPase
SRP54
AAA_22
PhoH
Motif
Other DBs
NCBI-GeneID:
100203524
NCBI-ProteinID:
XP_047140385
LinkDB
All DBs
Position
9:complement(49628388..49649982)
Genome browser
AA seq
1152 aa
AA seq
DB search
MSTLESQSYGPSSQTLTFLETEEADFGADTQGSEFEFNEFTLPSQTQTQSQASQLNSQLE
QINHPILNGYPENSTTISVKKGGQEHELLVRKHGNKEKLSNNKEKEDSLVKDLAKSVSDL
NFEEEDEENIAEKVLPSHACRYCSIHDPASVILCNLCKKWFCNGRGNTSGSHIINHLVRG
KHKEVTLHKDGPLGETQLECYNCGCRNVFLLGFIPAKADSVVVLLCRQPCAQQSNKQDST
WDQTQWQPLIHDRCFLSWLVKIPSEQEQLRARQISATQINKLEELWKDNPDAVLEDLEKP
GVDEEPQAVLLRYEDAYQYQNIFGPLVNHEAEYDKKLKESQSQDNIVVRWDIGLNKKRIA
YFNFPRADGEMRLMQGDELRLRYNGEMRKPWSGEGHVTKVPNNFGEEVGLELRKNDGVPT
ECTHHFSVDFIWKSTSFDRMQYAMKTFAVDETSVSGYIYHKLLGHDVEEQNVKCSLPKRF
SAPGLPELNHSQVYAVKTVLQRPLSLIQGPPGTGKTVTSASIVYHLAKQGLGQILVCAPS
NIAVDQLTEKIHKTGLKVVRLAAKSREAIDSPVGFLALHNQVRNMDSMPELQKLQQLKDD
QGELSSSDEKRYKTLKTSAEKELLQHADVICTTCIGAGDPRLRVAKLRFRCVLIDESTQA
TEPECMVPIVHGTKQLVLVGDHCQLGPVVMCKKAASAGLSQSLFERLVVLGIRPIRLQVQ
YRMHPSLSEFPSNLFYDGTLQNGVTVAERSQPGVDFPWPVGDKPMFFYATTGQEEISSSG
TSYLNRTEAATVEKIATRFLRAGVKPEQMGIITPYEGQRAYIVAYMQFSGSLHSSLYQNI
EVASVDAFQGREKDYIIMSCARSNEHQGIGFLKDPRRLNVALTRSKYGLIIIGNPKVLSK
QPLWNHLLNDYKEKRVLVEGPLNNLKESMIQFSKPRKLVNRTNPGGRFMTNTMFDAREAL
LAPGMYPNRNIRPPHVDPVMDSYYRTHDRMNFFPTGPDQARNAFAANMPIPVGMFMSPMP
PPTYQFNHQAMSVRPGHQNRPRMPVGPRMNQKTGGNYNNNNNRNGTNQDLSQGPLSQGPL
TQGGMSQQMHPLSQPLSQPELSQDSYLGEDFQLKSQADQVLSQDSSYQGDRGGYHPFSSQ
ADYSQPMYNSQY
NT seq
3459 nt
NT seq
+upstream
nt +downstream
nt
atgtctacactagaatcccaaagctacggtccgtcgtctcagaccttgacttttttagaa
actgaagaagctgacttcggtgcagatacacaaggaagtgaatttgagtttaatgaattt
actttgccatctcaaacccaaactcaatctcaggcttcccaactaaactctcagttagaa
caaataaatcatcccatactaaatggttaccctgaaaattcaacaactataagtgtaaag
aaaggtggacaagaacacgaattgttagtcagaaaacacggcaataaagaaaaattatca
aataataaagaaaaagaagactcgttagtgaaggatcttgccaaaagtgttagtgacctt
aattttgaagaagaagacgaagaaaatattgctgaaaaagtattaccttcacatgcatgc
aggtattgtagtatccatgatccagcttctgtaattttgtgcaatctatgcaaaaaatgg
ttttgtaatggaagaggaaatacttctgggagccacattattaatcatttggttcgaggt
aaacacaaagaagtgacattacacaaagacggtcctttaggtgaaactcagctggaatgc
tataactgtggttgtcgcaatgtttttttacttggatttattccagcaaaagcagattct
gttgtagtcttactatgtcgtcagccttgtgcccaacaaagcaataaacaagattcaact
tgggatcaaacccaatggcagccattgattcatgatcgatgttttctttcatggctggtt
aaaattccttcagagcaagagcagcttcgggctagacaaatttcagcaactcaaattaat
aaactagaagaattatggaaggacaacccagatgcagtacttgaagatctagagaagcca
ggtgttgatgaagagccacaagcagtcctgttaagatatgaagatgcttaccagtatcaa
aatatatttggtcctcttgttaatcatgaagcagagtatgacaaaaagttgaaggaatca
cagtctcaagataatattgttgttcgttgggacatcggtttaaacaaaaaaagaatagca
tactttaattttccccgtgctgatggtgaaatgcgcttaatgcaaggggatgagcttcgc
ttacgctacaatggagagatgaggaagccttggtctggtgaagggcatgtaactaaagtt
cctaacaattttggagaggaagttggccttgaattacgaaaaaatgatggcgttcctaca
gaatgcactcatcatttctctgtagattttatttggaagtcaacatcatttgacagaatg
caatatgcaatgaaaacttttgctgttgatgaaacatctgtaagtggttacatttatcat
aagttattaggccatgatgttgaagagcaaaatgtcaagtgcagtcttcctaaaaggttt
tcagctcctgggctacctgagttaaatcattctcaagtgtatgctgttaaaactgttctt
caacgacctttaagtctcattcaaggtccaccaggtactggcaaaacagtgacttcagca
agtattgtgtatcaccttgctaaacaggggttgggacagattcttgtttgcgctccgagt
aatattgctgttgatcaactaacagaaaaaattcataaaacaggattaaaggtagttcgc
ttagctgccaaaagtcgagaagcaattgattcacctgtaggatttcttgcacttcataat
caagtaagaaatatggatagtatgcccgaacttcaaaaattgcaacagttaaaagatgat
caaggtgagctttcatcttctgatgaaaagagatacaaaacacttaaaacatcagctgaa
aaggagttacttcagcatgctgatgtgatttgtacaacatgtattggagctggtgatcca
agacttcgtgtagcaaaattgcgtttcagatgtgttctcattgatgaatccacacaagcc
actgaaccagaatgtatggtccccattgtacatggaacaaaacagcttgtcttagttggt
gatcattgtcaacttggtcctgtagttatgtgtaagaaagctgcaagtgctggtttatct
caatcactatttgaacggcttgttgtacttggtatacgacctattcgtttgcaagtgcaa
tatcgtatgcatccttcattaagcgaatttccatcaaatttattttatgatggaacactt
caaaatggtgttactgttgctgaaagatcacagcctggtgttgattttccatggccagtt
ggtgataaaccaatgtttttttatgctaccactggacaagaagaaatatcttcttctggc
acatcttatttgaacagaactgaagctgctacagttgaaaaaattgctacaaggttttta
cgtgcaggtgttaaaccagagcaaatgggcattataactccatatgagggtcaaagagca
tatattgtagcttatatgcagtttagtggttctctgcactcatctctatatcagaacatc
gaagtagctagcgttgatgcttttcaaggcagagagaaagattacatcataatgtcttgt
gctcggtcaaatgagcaccaaggtattggttttttaaaagatcctcgaaggctcaatgtt
gctttaactcgatcaaaatatggtttaattatcatcggaaatccaaaagtgctttccaaa
cagccgttatggaatcatcttctcaacgattacaaagaaaaacgagtactagtagaaggt
cctttaaacaatttgaaagagagtatgattcagtttagcaagcctagaaaattggtcaat
cgaacaaatccaggtgggcgttttatgacaaatacaatgtttgatgctagagaagcgctt
cttgcaccaggaatgtatccaaatagaaacataagaccaccacatgttgaccctgtgatg
gattcatactatcgcactcatgatagaatgaacttttttcctactggtcctgatcaagct
agaaatgcatttgctgctaatatgccaataccagttggaatgttcatgtcaccaatgcca
cccccaacttaccagtttaatcaccaggcaatgtcggtgcgtccaggtcatcaaaatcgt
ccacgaatgccagttggtccaagaatgaaccagaaaactggtggaaattataataataat
aacaatagaaatggaactaaccaggatttatctcaagggccattatcgcaaggtcctctc
acccaaggaggtatgagccaacaaatgcatcctttgtcacaaccactctctcaaccagag
ttatcacaggatagctacttaggagaagacttccagcttaaatctcaagctgatcaggtt
ttatctcaagattcgtcttatcaaggagatcgtggtggctaccatccgttttcttcacaa
gcagattactctcagccaatgtacaattctcagtattga
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