Hydra vulgaris (swiftwater hydra): 100212302
Help
Entry
100212302 CDS
T01080
Name
(RefSeq) DNA ligase 4
KO
K10777
DNA ligase 4 [EC:
6.5.1.1
]
Organism
hmg
Hydra vulgaris (swiftwater hydra)
Pathway
hmg03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
hmg00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
100212302
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
hmg03400
]
100212302
Enzymes [BR:
hmg01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
100212302
DNA repair and recombination proteins [BR:
hmg03400
]
Eukaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
DNA Ligase 4 complex
100212302
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_A_M
DNA_ligase_A_N
DNA_ligase_A_C
BRCT_2
BRCT
RNA_ligase
DNA_ligase_IV
LIG3_BRCT
mRNA_cap_enzyme
DUF2950
Motif
Other DBs
NCBI-GeneID:
100212302
NCBI-ProteinID:
XP_002166379
UniProt:
T2MFF1
LinkDB
All DBs
Position
8:11248995..11317095
Genome browser
AA seq
891 aa
AA seq
DB search
MSIQTVDSQVSFNDFVKVVEKISNTASKEKKQDIFKKFFSRWREKHKQLHGEEKTSDSLY
PVIRIILPHLDKDRSYGLKEIFLAKYYIEVLNISKKSTDGINLLRYKTPKLGKQGAGDFA
SVVYAALKNRCPDKGRFTIADVNECLDIIASANSEKRRDLVKNEIKKMIQNCCALEQKWI
IRILLKEIRLGMSENTILPLFHPDALELYNISNSLHKVCLDLHDQNITLNKKNIMLMSPF
RPMLGMRSTIDNIVKVLKHSEFFIETKIDGERIQLHKNGEQYAYFSRNAYDYSEIFGCTK
YSGTLTQYINMLFKTDIKTCILDGEMVVYCVETNSFMLKGSNVDVKAQLPSGLQPCFVVF
DVLMINDIELANISLKDRISKLVSIFDVMPGRIEVVDRKIGRNKEDIINAVNNAIDKCEE
GIVVKDPLSLYVPNKRNGSGWYKLKPEYIDSLSDDLDLIIIGGQYGSGHRGGIISHFLLG
VAVKTEEGSDTKPSYFKTFAAVGSGYTDKELSSLCSKLDKYWQKFDLKRLPSMIEFTSGC
KEKPDVWIEPDKSVIVQVKAAEIIVTDKYAFGYTLRFPRLERFRYDKSWYDCMTTEDIID
LQKAACGKLTSKHIESESSTTSNKKKRRLDDHVDFPVAIGKQFKAADVSNINESSSAFKG
KEFCVINGSLTCTKQQLEEKIAEMSGVFVQNPGEDTYCVIADKVNVRVKHIIGSGKCDVV
KVTWLLECYEKKALLPFCPKYMHYSTTKTLALLEVDFDKFGDHYLEDINPSTLSDIFSHM
NADNLNAENIAELDERYTISSVGLFRRHKLYLASKLHSFVSLEFRFYGGTLCNQLNVASH
VLVDESDPETLVNIRQLIRNLKKKPHVVTASWIRDCIDFKRLIAEGPYEPK
NT seq
2676 nt
NT seq
+upstream
nt +downstream
nt
atgtctattcaaacagttgattcacaggtatctttcaatgattttgtaaaggttgttgaa
aaaatcagcaatacagcaagcaaagagaagaagcaggatatctttaaaaagtttttttca
agatggagagagaagcacaagcagttacacggtgaagaaaaaacatcagactcactctat
cctgtcatcagaattattttgcctcatcttgataaagatcgatcatacggattaaaagag
atttttctggcaaagtactacattgaagtcttgaatatatctaaaaaaagcacagatggc
attaatcttttaagatataaaacaccaaagttaggaaaacagggagctggagattttgca
agtgtagtatatgcagctttaaagaaccgatgtcctgataaaggaagatttactattgca
gatgtcaatgaatgtttagatataattgcaagtgcaaattctgaaaagagaagagattta
gtgaagaatgagattaaaaaaatgattcaaaactgctgtgctttggaacagaagtggata
attaggattttacttaaggaaataagactaggaatgagtgaaaatacaatactcccatta
tttcatccagatgctttagaactctacaatatctctaacagtctccataaggtatgtttg
gatttacatgatcagaacatcacacttaataaaaaaaatatcatgttaatgtcaccattt
cgtcccatgttgggcatgcgttctacaattgacaatattgtaaaagtcttaaagcacagt
gagttttttattgaaacaaaaattgatggtgaacgcattcagttgcataaaaatggtgaa
cagtatgcttacttcagcagaaatgcatatgattattcagaaatatttggttgtacaaaa
tatagtggaacgcttacccaatacatcaacatgctttttaaaactgatattaaaacatgc
atattggatggagaaatggttgtttattgtgtggaaacgaatagttttatgttaaaagga
tctaatgttgatgttaaagcacaactgccaagtggtttacaaccttgttttgttgttttt
gatgttttgatgattaacgacattgagctggctaacatttcattaaaagatcgcataagc
aagttagtttcaatttttgatgtaatgccaggtagaattgaagttgttgatagaaagatt
ggccgaaataaggaagatatcattaatgctgttaataatgctattgacaagtgtgaagaa
gggattgttgttaaagatcctttatctttatatgttccaaacaaaagaaatggtagtggt
tggtacaaattaaagccagaatatattgatagtttaagtgatgacttagatttgatcata
attggagggcagtacggctcaggacatagagggggaataatctcacattttcttcttggt
gttgctgttaaaacagaagaagggtctgacacaaaaccaagttatttcaaaacatttgca
gcggttggctctggttacactgataaagagttaagctctttgtgtagcaaacttgacaag
tattggcaaaagtttgatttgaaaagattgccaagtatgattgaatttacaagtggttgt
aaggaaaaacctgatgtttggattgagccagataaatcagttattgttcaagtgaaagct
gcagaaattattgttacagacaaatatgcttttggttatacactaaggtttccacgctta
gaacggtttcgctatgataagagttggtatgactgtatgacaacagaagatattattgac
ttacaaaaggctgcctgtgggaaattaacatctaaacacattgaaagtgaatcatctact
acatctaataaaaagaagcgaagacttgatgaccatgttgattttccagttgcaattgga
aaacaattcaaagctgctgatgtttcaaatataaatgaatctagctcggcttttaaagga
aaagaattttgtgttatcaatggttcactaacatgtacaaagcaacaacttgaagagaaa
atagctgagatgagtggtgtttttgttcaaaatcctggagaagatacctattgtgtcata
gcagataaagttaatgttagagtcaagcacataataggtagtggaaaatgcgatgtagta
aaagtaacttggctgttagaatgttatgaaaaaaaagcgctgcttccattttgtcctaaa
tatatgcactattctactactaaaaccttggctctccttgaagtagactttgataaattt
ggggatcattatttggaagatataaatcctagtacactttcagacattttcagtcatatg
aatgctgataatttaaatgcagaaaatattgcagaactggatgaacgctacacaattagt
tctgttggtttatttagaagacacaaattgtatttagcatccaaattacattctttcgtc
agtttagagtttcgtttttatggtggaactttgtgcaatcagctaaacgtcgcttcacat
gtattagttgatgaaagtgatccggaaacattagttaacattcggcaacttatacgaaat
ctaaagaaaaagccacatgttgttactgcaagttggataagagactgcatcgattttaag
cgcctaattgcagaaggaccatatgaaccaaaataa
DBGET
integrated database retrieval system
