Hydrocarboniclastica marina: soil367_02495
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Entry
soil367_02495 CDS
T06192
Name
(GenBank) RNA polymerase sigma factor RpoD
KO
K03086
RNA polymerase primary sigma factor
Organism
hmi
Hydrocarboniclastica marina
Pathway
hmi02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
hmi00001
]
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
soil367_02495
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
hmi03021
]
soil367_02495
Transcription machinery [BR:
hmi03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
soil367_02495
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_ner
Sigma70_r1_1
Sigma70_r3
Sigma70_r2
Sigma70_r4
Sigma70_r1_2
AAA_13
TMPIT
Motif
Other DBs
NCBI-ProteinID:
QCF24905
UniProt:
A0A4P7XE80
LinkDB
All DBs
Position
complement(550237..552084)
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AA seq
615 aa
AA seq
DB search
MSGNSQKSRLKELIARGKEQGYLTYAEVNDHLPEDIADPDQVEDIIRMINDMGIQVGEEA
PDAETLLMTDGDTAADEAAAAEAAAALAAVESDAGRTTDPVRMYMREMGTVELLTREGEI
VIAKRIEEGIRDVMAAIVHFPGTAAAIINAYDTIVENEGRLSDIVSGFLDPDGVEPLNTP
DEPEPASSDSSDSDGDSDDDDSDSDDDAEKESGPDPEETRLRFELLREKLALAMAEIDKH
GHSSKEAQKALYDLGEVFAPFKLANRHFDQLVNLIRSTNESIREHERAIMAICTRDCKMP
RKDFIKQFPGNETNLDWPKKVGRSRKDYAPAINERSDELIRLQKRILQIEQHISLTVPEL
KEINRRVSIGEAKARRAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDK
FEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKLNRVSRQMLQEMGREP
TPEELGERMEMPEDKIRKVLKIAKEPISMETPIGDDEDSHLGDFIEDILALSPVDSATAE
GLREATKTVLSGLTAREAKVLRMRFGIEMNTDHTLEEVGKQFDVTRERIRQIEAKALRKL
RHPSRSDHLRSFLDE
NT seq
1848 nt
NT seq
+upstream
nt +downstream
nt
atgtcaggcaattcgcaaaagtcccgtttgaaagagctcatcgcccgcggcaaagaacag
ggttacctgacttatgccgaggtcaatgaccacctgcctgaagacatcgctgatcccgat
caggtcgaagacattattcgcatgatcaacgacatgggcatccaggtcggcgaagaagct
ccggacgcagaaacgctgctgatgaccgacggcgacaccgccgccgatgaggctgcagct
gccgaagccgcagccgcgctcgccgcggtggagagtgatgccggtcgcactacggacccg
gtacggatgtacatgcgcgagatgggcacagtcgaactgctgacccgggaaggcgaaatc
gtcatcgccaagcgcatcgaagaaggcatacgcgatgtcatggcagccattgtccatttt
ccgggcaccgccgctgccatcattaatgcctatgacactatcgtcgagaatgaaggccgc
ctgagcgacatcgtgtccggttttctcgatccggatggcgtagagccgttgaatactccg
gatgagccagaacctgcgtccagcgattcatccgacagcgacggcgacagcgatgacgac
gacagtgattccgacgatgatgccgagaaagagagtggcccggatccggaagaaacgcgc
ctacgtttcgaactcctgagagaaaagctcgctttggccatggccgaaatcgacaagcac
ggtcacagcagcaaagaagcacagaaagcgctgtatgacctgggcgaagtcttcgcgcct
ttcaagctggccaatcgtcacttcgaccagctggtgaacctgattcgctcgaccaacgag
tcgatccgcgagcatgagcgcgcgatcatggcgatctgtacccgcgactgcaaaatgccg
cgcaaggacttcatcaagcagttcccgggcaatgagaccaacctcgactggccaaagaaa
gtcggtcgtagccgcaaggactacgccccggctattaacgagcgcagcgatgagctgatc
cgcctgcaaaagcgtattctgcagatcgagcagcacatcagcctgaccgtgcccgagctc
aaggaaatcaaccgccgggtatcgattggcgaagccaaggcccgccgggccaaaaaagaa
atggttgaagctaacctgcgtctggttatctccatcgcgaagaagtacaccaaccgcggc
ctgcagttcctcgacctgatccaggaaggcaacatcggcctgatgaaagcggtagacaag
ttcgagtaccgtcgtggctataagttttcgacctacgcgacctggtggataaggcaggcg
atcacgcgttctatcgccgaccaggcccggaccatccgtattccggtccacatgatcgag
accatcaacaagctcaaccgcgtttcgaggcagatgttgcaggagatgggccgcgagccg
acgccggaagaattgggcgaacgcatggaaatgccggaggacaagatccgtaaagtcctc
aagatcgcgaaagagcctatttccatggaaacgcccatcggtgacgatgaagattcgcac
ctgggtgatttcattgaagatatcctggctctgtcacccgtggactcggcaacagccgaa
ggcctgcgcgaagcgaccaagaccgtcctgtccggtctgacggcccgcgaagccaaggtg
ttgaggatgcggttcggtatcgagatgaacacggatcacacgctggaagaagtcggcaag
cagttcgacgtcacccgcgagcggatccggcagatcgaagcgaaagccctgcgcaagctc
cgccatccttcccggtcggaccacctgcgcagcttcctcgacgagtag
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