Hydrocarboniclastica marina: soil367_08925
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Entry
soil367_08925 CDS
T06192
Name
(GenBank) ATP-dependent helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
hmi
Hydrocarboniclastica marina
Pathway
hmi03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
hmi00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
soil367_08925
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
hmi03019
]
soil367_08925
03009 Ribosome biogenesis [BR:
hmi03009
]
soil367_08925
Enzymes [BR:
hmi01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
soil367_08925
Messenger RNA biogenesis [BR:
hmi03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
soil367_08925
Ribosome biogenesis [BR:
hmi03009
]
Prokaryotic type
rRNA helicases
soil367_08925
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
CMS1
AAA_22
Flavi_DEAD
AAA_19
Motif
Other DBs
NCBI-ProteinID:
QCF26037
UniProt:
A0A4P7XJJ9
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All DBs
Position
1983459..1985342
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AA seq
627 aa
AA seq
DB search
MTNEALPVQFSNLGLPEHLLQTLIQVGYETPSPIQAQTIPILLQGHDLLGQAQTGTGKTA
AFALPILAKLNTRNRATQALVLAPTRELAIQVAEACQTYARNLPGFQVVPIYGGAGYGNQ
LKQLRSGAQLVVGTPGRVMDHIRKGTLKLDSLEVLVLDEADEMLRMGFIDDVEWILERTP
EKRQIALFSATMPREIQQVANKYLRDPQTVKIQSSTSTAPAINQRYWPVSGLSKLDALTR
ILEVEPIEGAIIFVRTKLATVELAEKLVARGFTAEALNGDMAQAQREKTIDRMRKGKLDI
LLATDVAARGIDIPRISHVINYDIPFDTESYVHRIGRTGRAGRTGEAILFVSNRERRMLG
AIERATRQPIAVMNLPSESDINAQRVERFKAKIEQTLANENLDFYRQLLSDYQESTETPA
LEIAAALARIAQGDATLLVEPQKRTSEKSRERDGDRPKRQHAESQRDGGRTEAKRKLKQE
NLNDAQAKPLKNFPDVRMARYRIDVGYVNGVNPGQIVGAIANEANMDSAYIGHIEIFDDF
TTVDLPAEIPKEVFQHLQRVRVCQRPLLLSVMRSDSAAGPKSSTGRSADPKPAGKSAGEK
PVAPKRRVKPGKKKTDGSKPPRKPKKK
NT seq
1884 nt
NT seq
+upstream
nt +downstream
nt
atgacgaatgaagcccttccagtccagttttccaaccttggtttacccgaacatctgctc
cagactctaatccaggtaggttatgagacgccctcgcctatccaggcacaaaccatcccc
attctcctgcagggccacgatctgctcgggcaggcccagactggcacagggaaaaccgca
gcatttgccctgccaatactcgcgaaactgaatacccggaaccgcgccacccaggcactg
gttctggcgccaacccgggaacttgcgattcaggtggcagaggcctgccagacatacgcg
cgcaatctgcccggtttccaggtagtgccaatatacggtggcgccggatatggtaatcag
ctcaaacagctccgtagcggcgctcaactggtggtgggcacgccgggtcgggtcatggat
catatccgcaagggcactctgaagcttgacagccttgaagtcctggtattggacgaagcc
gacgaaatgcttcggatggggtttatcgatgatgtcgagtggattcttgagcgaacgccc
gaaaaacgccagatagcgctcttttctgcgaccatgccccgtgagattcagcaggttgcg
aacaagtatctgcgcgatccgcagacggtcaagatccagagcagcacatccactgcccct
gcgatcaaccaacgttactggccagtcagcggcctgagcaagctggatgcgctaactcgc
atcctggaagtggagcccattgaaggcgccatcatttttgtccgtaccaaactcgcgact
gtagaacttgcggagaagctggtggctcgcggctttactgcggaagccctgaatggcgat
atggcccaggcccagcgggagaaaacaatcgaccgcatgcgcaaaggcaagctcgacatt
ctcctggcgacggatgtcgctgcccgcggcattgatattccgcgcattagtcacgtcata
aactatgacatcccgttcgatactgagtcctatgtacacagaatcggccgtaccggccgc
gccggtagaacgggggaggcgatactcttcgtctcgaatcgcgagcgacggatgctcgga
gccatcgaacgagcgacgcggcagccaatcgcggtgatgaacctgccttcagaaagcgac
ataaatgcccagagggttgaaaggttcaaagcaaaaatagaacagacgctggcgaatgaa
aatctcgatttctaccgacagctactgagcgactatcaggaaagcacagagacacccgcc
cttgaaattgctgcagcgctggcccgcattgcgcaaggcgacgctacccttctggttgag
ccgcaaaaaagaacatcagaaaagagccgtgaacgtgacggtgatcgaccgaagcgacag
catgctgagtctcagcgagatggcggccgcactgaggcaaagcggaagctcaagcaggag
aaccttaatgatgcccaggcaaagccactgaagaattttcccgacgtccgtatggcccga
tatcgcatagacgtcggctacgtcaacggggtcaacccgggtcagatagttggcgctatc
gccaatgaggcgaacatggacagcgcctacattggtcacatagagatctttgacgatttc
acgacagtagatctgcccgccgagataccgaaggaagttttccagcacctgcagagggtt
cgggtgtgtcagcgaccgctgctactgagcgtgatgcgaagcgacagtgcagcggggccc
aagtcttcgacaggtagatcggcagatccaaagcccgctggtaagtcagcaggtgaaaag
cctgtcgctcccaagcggcgggtgaaacccggcaaaaagaaaacggacggctccaagcca
ccccgaaaaccaaagaagaagtag
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