KEGG   Hydrocarboniclastica marina: soil367_08925
Entry
soil367_08925     CDS       T06192                                 
Name
(GenBank) ATP-dependent helicase
  KO
K05592  ATP-dependent RNA helicase DeaD [EC:5.6.2.7]
Organism
hmi  Hydrocarboniclastica marina
Pathway
hmi03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:hmi00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    soil367_08925
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:hmi03019]
    soil367_08925
   03009 Ribosome biogenesis [BR:hmi03009]
    soil367_08925
Enzymes [BR:hmi01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.7  DEAD-box RNA helicase
     soil367_08925
Messenger RNA biogenesis [BR:hmi03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Helicases
     soil367_08925
Ribosome biogenesis [BR:hmi03009]
 Prokaryotic type
  rRNA helicases
   soil367_08925
SSDB
Motif
Pfam: DEAD Helicase_C DbpA ResIII CMS1 AAA_22 Flavi_DEAD AAA_19
Other DBs
NCBI-ProteinID: QCF26037
UniProt: A0A4P7XJJ9
LinkDB
Position
1983459..1985342
AA seq 627 aa
MTNEALPVQFSNLGLPEHLLQTLIQVGYETPSPIQAQTIPILLQGHDLLGQAQTGTGKTA
AFALPILAKLNTRNRATQALVLAPTRELAIQVAEACQTYARNLPGFQVVPIYGGAGYGNQ
LKQLRSGAQLVVGTPGRVMDHIRKGTLKLDSLEVLVLDEADEMLRMGFIDDVEWILERTP
EKRQIALFSATMPREIQQVANKYLRDPQTVKIQSSTSTAPAINQRYWPVSGLSKLDALTR
ILEVEPIEGAIIFVRTKLATVELAEKLVARGFTAEALNGDMAQAQREKTIDRMRKGKLDI
LLATDVAARGIDIPRISHVINYDIPFDTESYVHRIGRTGRAGRTGEAILFVSNRERRMLG
AIERATRQPIAVMNLPSESDINAQRVERFKAKIEQTLANENLDFYRQLLSDYQESTETPA
LEIAAALARIAQGDATLLVEPQKRTSEKSRERDGDRPKRQHAESQRDGGRTEAKRKLKQE
NLNDAQAKPLKNFPDVRMARYRIDVGYVNGVNPGQIVGAIANEANMDSAYIGHIEIFDDF
TTVDLPAEIPKEVFQHLQRVRVCQRPLLLSVMRSDSAAGPKSSTGRSADPKPAGKSAGEK
PVAPKRRVKPGKKKTDGSKPPRKPKKK
NT seq 1884 nt   +upstreamnt  +downstreamnt
atgacgaatgaagcccttccagtccagttttccaaccttggtttacccgaacatctgctc
cagactctaatccaggtaggttatgagacgccctcgcctatccaggcacaaaccatcccc
attctcctgcagggccacgatctgctcgggcaggcccagactggcacagggaaaaccgca
gcatttgccctgccaatactcgcgaaactgaatacccggaaccgcgccacccaggcactg
gttctggcgccaacccgggaacttgcgattcaggtggcagaggcctgccagacatacgcg
cgcaatctgcccggtttccaggtagtgccaatatacggtggcgccggatatggtaatcag
ctcaaacagctccgtagcggcgctcaactggtggtgggcacgccgggtcgggtcatggat
catatccgcaagggcactctgaagcttgacagccttgaagtcctggtattggacgaagcc
gacgaaatgcttcggatggggtttatcgatgatgtcgagtggattcttgagcgaacgccc
gaaaaacgccagatagcgctcttttctgcgaccatgccccgtgagattcagcaggttgcg
aacaagtatctgcgcgatccgcagacggtcaagatccagagcagcacatccactgcccct
gcgatcaaccaacgttactggccagtcagcggcctgagcaagctggatgcgctaactcgc
atcctggaagtggagcccattgaaggcgccatcatttttgtccgtaccaaactcgcgact
gtagaacttgcggagaagctggtggctcgcggctttactgcggaagccctgaatggcgat
atggcccaggcccagcgggagaaaacaatcgaccgcatgcgcaaaggcaagctcgacatt
ctcctggcgacggatgtcgctgcccgcggcattgatattccgcgcattagtcacgtcata
aactatgacatcccgttcgatactgagtcctatgtacacagaatcggccgtaccggccgc
gccggtagaacgggggaggcgatactcttcgtctcgaatcgcgagcgacggatgctcgga
gccatcgaacgagcgacgcggcagccaatcgcggtgatgaacctgccttcagaaagcgac
ataaatgcccagagggttgaaaggttcaaagcaaaaatagaacagacgctggcgaatgaa
aatctcgatttctaccgacagctactgagcgactatcaggaaagcacagagacacccgcc
cttgaaattgctgcagcgctggcccgcattgcgcaaggcgacgctacccttctggttgag
ccgcaaaaaagaacatcagaaaagagccgtgaacgtgacggtgatcgaccgaagcgacag
catgctgagtctcagcgagatggcggccgcactgaggcaaagcggaagctcaagcaggag
aaccttaatgatgcccaggcaaagccactgaagaattttcccgacgtccgtatggcccga
tatcgcatagacgtcggctacgtcaacggggtcaacccgggtcagatagttggcgctatc
gccaatgaggcgaacatggacagcgcctacattggtcacatagagatctttgacgatttc
acgacagtagatctgcccgccgagataccgaaggaagttttccagcacctgcagagggtt
cgggtgtgtcagcgaccgctgctactgagcgtgatgcgaagcgacagtgcagcggggccc
aagtcttcgacaggtagatcggcagatccaaagcccgctggtaagtcagcaggtgaaaag
cctgtcgctcccaagcggcgggtgaaacccggcaaaaagaaaacggacggctccaagcca
ccccgaaaaccaaagaagaagtag

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