Haematobacter massiliensis: HmaOT1_06685
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Entry
HmaOT1_06685 CDS
T05861
Symbol
ligD
Name
(GenBank) DNA ligase D
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
hml
Haematobacter massiliensis
Pathway
hml03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
hml00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
HmaOT1_06685 (ligD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
hml03400
]
HmaOT1_06685 (ligD)
Enzymes [BR:
hml01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
HmaOT1_06685 (ligD)
DNA repair and recombination proteins [BR:
hml03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
HmaOT1_06685 (ligD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
LigD_N
DNA_ligase_A_C
DNA_ligase_A_M
DNA_primase_S
Motif
Other DBs
NCBI-ProteinID:
QBJ23967
UniProt:
A0A086Y086
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All DBs
Position
1030127..1032652
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AA seq
841 aa
AA seq
DB search
MALETYNAKRDFSRTAEPQGKALAGEGGLYVIQKHDARRLHYDLRLELDGVLKSWAVTRG
PSLDPAEKRLAVEVEDHPLDYATFEGTIPKGQYGGGSVIVWDKGHWRPDFDPHAGLKKGH
LEFELDGEKLRGRWHLIRMKPRRGEKRVNWLLIKAEDDEAREAGDILKEEPRSVASGRTV
EEVGKGARAPTKASQGGVAGKAKKTAAPREAGATETRQDKSENTADRPITRVRTTKAEQG
EREKLPDFIEPMLATLARHPPSSGDWLHEIKFDGYRLLARLEKGNVRLLTRSGLDWTERF
AGPLTEALEGLDARAALIDGELVVEKPSGASDFGALQADLSAGRADRFVYYAFDLLHLDG
YGLRSLPLVDRKAALERLIPGQGAVRFSAHFDDAGADVLAHACGLSLEGIISKRSASAYV
SGRGRDWLKAKCALRQEFVIGGFTQSTATPQAIGSLALGVQEAGTLRYVGRVGTGFTAEV
AHDLWSRLTDLETRDNPFSTRLDSTARRGLQHVRPELVAEVEFRAWTSDGRLRHASFRGL
REDKPAGDIVREEEAVERPENVELTHPDRIYWPAEGVTKADLADYYTRVWPRIAPFVTGR
ALALLRCPEGIEGPSFFQKHAWRGIPEQVRQVKDPKAPEDPFVAIDDLDGLIALVQSAVL
EIHPWGSTLQSWEKPDMIVMDLDPGEGITWPDIVSAAGKVRERLEDAGLAAFVKTSGGKG
LHVVAPLTPKATWPSVKSFTKSLAEAMAADEPDHFVATISKAKRKGRILVDYLRNQRGMT
AVAPYSTRARPGAAVSMPVPWEVLPEIGPQDFTVLNIAEHLSSDPWEAFRDSAKPLPSRR
R
NT seq
2526 nt
NT seq
+upstream
nt +downstream
nt
atggcgctggaaacatacaatgccaagcgggatttcagccggaccgccgagcctcagggc
aaggccctggcaggtgaaggtggcctttacgtcatccagaagcacgacgcgcggcgattg
cattacgacctgcggctcgagcttgacggtgtcctgaaaagctgggccgtgacgcgcgga
ccgagccttgacccggcggagaagcgcttggcggtcgaggtggaggatcacccgctcgat
tacgcgacgttcgagggcaccatcccgaagggtcaatacggcggaggcagcgtcatcgtc
tgggacaaggggcattggcggccggatttcgacccgcatgccggtttgaagaagggccat
ctggaattcgaactggacggggagaagttgcgaggtcgctggcatctcatccgcatgaaa
cccagacggggcgagaagcgggtcaactggctgctcatcaaggcggaggacgatgaggcg
agggaggcgggagacatcctgaaggaggagccgcgttccgttgcaagcggccggacggtg
gaggaggtgggcaagggggcgcgcgcgcccacaaaggcttcacaaggcggcgtcgccggc
aaggcgaagaaaacagccgcgccgcgcgaggctggcgcgaccgagacccggcaggacaaa
tcggaaaacaccgcagatagaccgatcacccgggtgcgcacgacaaaggccgagcagggt
gagcgggaaaagctgccggatttcatcgaacccatgcttgcgacacttgcaaggcaccct
ccgtccagcggggactggctgcacgagatcaagttcgacggctatcggctgttggcccga
ttggagaaggggaacgtgcgcctgctcacgcggagcgggctggactggacggagcggttt
gccgggccgctgacggaggcgctggaagggttggacgcccgcgcggcgctcatcgacggt
gaattggtggtggagaagccctccggggcctcggatttcggggccctgcaggccgatttg
tcggccgggcgggcagacaggttcgtctactatgctttcgaccttctgcatctggacggc
tatggcctgcgctccctgcctctggtggacaggaaggcggcgctggagcgcctcattccg
ggtcagggcgcggttcggttcagcgcgcatttcgacgatgccggtgcagatgtgcttgcc
catgcgtgcgggcttagcctggaggggatcatctccaagcggagtgcatccgcctatgta
tcggggcgcgggcgggactggctgaaggcgaaatgcgcgcttcgtcaggaattcgtgatc
ggcgggttcacccagtccaccgccacgccgcaggccattggttcgctggccttgggagtg
caggaagcggggacgctgcgctatgtcgggcgcgttgggacggggtttacggcggaggtg
gcccatgacctctggtcccgcctgacagatctggaaacgcgcgacaaccccttcagtacg
cggctggattcaaccgcgcggcgtgggcttcagcatgtccgacccgagcttgtcgcggaa
gtcgagttccgggcatggacatcggacgggcgcctgcgccacgcgtcgtttcgcgggctg
cgggaggataaacctgcgggagacatcgtgcgggaggaagaagccgtggaacgtcccgag
aatgtagaactcacccatcccgaccgaatctattggccggcagagggtgtgacgaaagcg
gatctggccgattactacacgcgggtctggccgcggatcgcccccttcgtcaccggtcgc
gcgctggcactgctgcggtgcccggagggaatagaggggccgagtttctttcagaagcac
gcatggcgcggcatcccggagcaggtccgtcaggtaaaagatcccaaggccccggaagac
ccctttgtcgcgatcgacgatctcgatgggctgatcgcactcgtgcagtccgccgtcctc
gagattcacccctggggctcgacgctgcagagctgggagaagcctgacatgatcgtcatg
gacctcgaccccggagagggcattacctggcccgatatcgtgagcgcggcgggcaaggtg
cgtgagcggctggaggacgcggggcttgcggccttcgtcaagacctccggtggcaagggg
ctgcacgtggtcgcgccgctgacgccgaaagcgacatggcccagtgtgaaatccttcacc
aagtctcttgcggaagcgatggccgcggacgagccggaccatttcgtggcgacgatcagc
aaggccaagcgcaagggccggatcctggtcgattacctgcgcaatcagcgtgggatgacg
gcggttgccccttattccacccgtgcgcgcccgggggccgcggtttcgatgccggtacca
tgggaggtgctccccgaaatcggcccgcaggatttcaccgtgctgaacatagcagagcac
ctttccagcgatccatgggaggcgttccgggactcggccaaaccactgccgtcgcggcgg
agatga
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