Helcobacillus massiliensis: R3I40_05960
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Entry
R3I40_05960 CDS
T09498
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
hmm
Helcobacillus massiliensis
Pathway
hmm03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
hmm00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
R3I40_05960 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
hmm03400
]
R3I40_05960 (mfd)
Enzymes [BR:
hmm01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
R3I40_05960 (mfd)
DNA repair and recombination proteins [BR:
hmm03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
R3I40_05960 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
TRCF
UvrB_inter
Helicase_C
CarD_TRCF_RID
ResIII
MFD_D3
RecG_dom3_C
AAA_22
Motif
Other DBs
NCBI-ProteinID:
WOO94134
LinkDB
All DBs
Position
complement(1285986..1289498)
Genome browser
AA seq
1170 aa
AA seq
DB search
MQRIGEAFSASQSISIIAPQGMHPFIAAEAASSAGTDQPLIIVTATTREAEDVLAQVQAL
APSAPAALLPAWETLPHERLSPRSDTVATRLATLYRLAHPEETDPLSVLVMPVRALMQPM
AKGLGDLRPVRIVRDDAYPMDQLVDDLAAAAYVRVDMVERRGEFAVRGGILDVFAPTEPH
PVRIEFFGDDVDEMRFFSVADQRSLDAELTELHAPACREILLTDDVRRRAREMAQQLPGL
ADMLTQITDGIAVDGMESLSPVLVDGMESVAETVPERSRVLVLEPERVRARADELVQTTG
EFLAAAWSSAAGEGAVPIDVDEASFLDIDALQEIFRRRGIPLTTAAPFGIDADITVAAAA
HPGYGGSTAQAARDLHRRQTDGWRLLITTAGAGTGRHLAESLRDADVTAQFTETLDEEPA
EGQLLITTGPITEGVVLESEQIMVMCERDLTGKSGARRSSERRLASKRRVTVDPLQLKAG
DFVVHDHHGVGRFVELTSRTVGQAGKRTTREYLVIEYAPSRRGQPGDRLYVPSDQLEHIT
KYVGGESPSVNRMGGSDWSKTKSKARKAIREIADELVRLYSARQASEGHAFGPDTPWQQE
LEDAFEFTETPDQLSTIDEVKKDMERPIPMDRLICGDVGFGKTEIAVRAAFKAVQDGKQV
AVLAPTTLLSQQHVDTFTERFAGFPVTVRGLSRFQAKAESDATVEGLLDGSVDVVIGTHR
LLTGQVRFKDLGLIIVDEEQRFGVEHKETLKALRANVDVLSMSATPIPRTLEMAVTGIRE
LSTLATAPEERHPVLTYVGAQEDKQVAAAIRRELLREGQVFYIHNRVEDIDRTAQKIREL
VPDARVEVAHGKMNEAQLERVILDFWEKRFDVLVCTTIVETGLDISNANTLIVENADRFG
LSQLHQLRGRVGRSRERAYAYFLYRGDKPLTETAHDRLTTLATHSDLGAGMQVAMKDLEI
RGAGNLLGGEQSGHIAGVGFDLYVRMVGEAVNAFKGTGAPVRRDAKVELPLNARIPFDYI
ESERLRLEAYSKLSKAVSTEELESVREELTDRYGEMPPEVALLFTVARFRLDCIEAEIDE
VQVQGRMIRFGHLEVPDSVAMRLKRLFPGTLIKPATRLVLIPHPQTKRIGGTGLVDDDLL
DWCRTVIAVLRPDSAIAETAQAPGTVGAAR
NT seq
3513 nt
NT seq
+upstream
nt +downstream
nt
ctgcagcgcatcggggaggcgttcagcgcctcgcagtccatcagcatcatcgccccgcag
ggcatgcatcccttcatcgcggcggaagcggcgagctccgccggcaccgatcagccgctg
atcatcgtcaccgccaccacccgcgaagccgaggacgtgctcgcacaggtgcaggcgctg
gccccgtcggcccccgcggccctgctgcccgcgtgggagaccctcccgcatgagcggctc
tcgccgcgctcggatacggtcgcgacgcggctcgccactctgtaccggctcgctcacccg
gaggagaccgacccgctgagcgtgctggtgatgccggtgcgcgccctgatgcagccgatg
gcgaagggcctcggcgacctgcggcccgtgcgcatcgtccgcgatgacgcctacccgatg
gatcagctggtggacgacctggcggccgccgcctacgtccgggtcgacatggtggagcgc
cgcggcgagttcgccgtgcgcggcggcatcctcgacgtgttcgcgccgacggagccccac
ccggtccgcatcgagttcttcggcgacgacgtcgacgagatgcgcttcttctccgtcgcc
gatcagcgctcgctggacgccgaactcaccgagctgcacgcccccgcctgtcgggagatc
ctcctgaccgacgatgtgcgccgacgtgcccgcgagatggcccagcagctgccgggcctc
gcggacatgctcacccagatcaccgacggcatagccgtggacggcatggagtccctcagc
ccggtcctggtggacgggatggagtccgtcgccgagacggtgccggagcgctcccgcgtg
ctcgtgctggagccggagcgcgtccgcgcccgagccgacgaactggtgcagaccaccggg
gagttcctcgccgccgcgtggtccagcgccgctggtgagggcgcagtgccgatcgatgtg
gacgaggccagcttcctcgacatcgacgcgctgcaggagatcttccgccggcgcggcatc
ccactgaccaccgccgccccgttcggcatcgacgccgacatcaccgtcgccgcagccgcc
caccccggctacggcggatcgaccgcccaggcggcgcgagatcttcaccgccggcagacc
gacggctggcgcctgctcatcaccacggccggcgccggcaccggccgccacctcgcggag
agcctgcgcgacgccgacgtcaccgcgcagttcaccgagaccctcgacgaggaaccggcc
gagggccagctgctcatcaccaccggccccatcaccgaaggcgtggtgctggagtcggag
cagatcatggtgatgtgcgaacgcgacctcaccggaaagtccggggcgcgccgcagctcg
gagcgtcgcctggcgtccaagcgccgcgtcacagtggacccgctgcagctgaaggcgggg
gatttcgtggtgcacgaccaccacggcgtcggcaggttcgtggagctcaccagccgcacc
gtcggccaggcgggcaaacggaccacccgcgaatacctcgtcatcgagtacgcgccgtca
cgccgcggacagccgggtgatcgtctgtacgtgcccagcgaccagctggagcacatcacg
aagtacgtcggcggggagtcgccgagcgtcaaccggatgggcggcagcgactggtcgaag
accaagtcgaaggcccgcaaggcgatccgggagatcgccgacgaactggtgcggctgtac
agtgcccgccaggcgtccgaagggcacgccttcggtccggacaccccctggcagcaggag
ctggaggacgcgttcgagttcacggagacgcccgatcagctgtccacgatcgacgaggtc
aagaaggacatggagcgcccgatcccgatggatcgcctgatctgcggcgacgtcggattc
ggcaaaacggagatcgcggtccgtgcggcgttcaaagccgtccaggacggaaaacaggtc
gctgtgctcgctcccaccaccctgctgtcgcagcagcatgtggacaccttcaccgagcgc
ttcgccggcttccccgtcacggtgcggggcctgtcgcgcttccaggcgaaggcggagtcg
gatgccacggtggagggcctcctcgacggctccgtcgatgtcgtcatcggcacgcaccgt
ctgctcaccggccaggtgcgcttcaaggacctgggcctgatcatcgtcgatgaggagcag
cgcttcggcgtggagcacaaggagacgctgaaggcgctgcgcgccaacgtcgatgtgctg
tcgatgtcggccacaccgatcccgcgcaccctggagatggccgtcaccggcatccgcgaa
ctatccactctggcgaccgcgcccgaggagcgtcaccccgtcctcacctatgtgggcgca
caggaggacaagcaggtcgccgcggcgatccgtcgcgagctgctgcgcgaggggcaggtg
ttctacatccacaaccgggtggaggacatcgaccgcaccgcgcagaagatccgtgagctg
gtgccggatgcccgggtcgaagtggcgcacggcaagatgaacgaagcgcagctggagcgc
gtgatcctcgacttctgggagaagcggttcgatgtgctggtgtgcaccaccatcgtggag
accggcctggacatctccaacgcgaacacgctgatcgtggagaacgccgaccggttcggc
ctctcgcagctgcaccagctgcgcggcagggtgggccggtcccgggaacgcgcctacgcg
tacttcctgtaccgcggcgacaagccgctcactgagaccgcccacgaccgcctcaccact
ctcgccacccactccgacttgggtgccggcatgcaggtggcgatgaaggacctcgagatc
cgcggcgcaggcaacctcctcggcggtgagcagtccggccacatcgccggtgtgggcttc
gacctctacgtccgcatggtcggcgaggcggtgaatgcgttcaagggcacgggtgccccg
gtgcgccgggacgcgaaggtggagctgccgctgaacgcccggatcccgttcgactacatc
gaatcggagcggctgcgcctggaggcgtattcgaagctgtcgaaggccgtcagcaccgag
gagctggagagcgttcgggaggagctcaccgatcggtacggcgagatgccgcccgaggtc
gctctgctgttcacggtggcgcgcttccgcctggactgcatcgaggcggagatcgacgag
gtgcaggtgcagggccggatgatccgcttcggtcatctcgaggtgccggattcggttgcg
atgcgcctcaagcgtctgttccccggcacactcatcaaaccggcgacccgtttggtcctc
atcccgcacccgcagaccaagcggatcggcggcaccggcctcgtggacgacgacctgctc
gactggtgccgcacggtcatcgccgttctgcgcccggacagcgccatcgctgagaccgct
caggccccgggcaccgtgggggccgcacgatga
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