Halobacillus mangrovi: HM131_02765
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Entry
HM131_02765 CDS
T04799
Name
(GenBank) DNA ligase D
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
hmn
Halobacillus mangrovi
Pathway
hmn03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
hmn00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
HM131_02765
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
hmn03400
]
HM131_02765
Enzymes [BR:
hmn01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
HM131_02765
DNA repair and recombination proteins [BR:
hmn03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
HM131_02765
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
DNA_ligase_A_M
RNA_ligase
DNA_primase_S
DNA_ligase_A_C
BLM10_N
Motif
Other DBs
NCBI-ProteinID:
ARI75814
UniProt:
A0A1W5ZR97
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All DBs
Position
complement(534370..536142)
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AA seq
590 aa
AA seq
DB search
MIEPMLLTMADELPTGEKWRYEIKYDGFRVILTWTENGITLTSRNGKDLTERFPEIISLS
EQLTPPSLPITLDGELVILNTPFQANFSLLQQRGRLRSSDKINYYATRRPATFMAFDFIN
KPNETYKKRKQQLKEIIHHLDSPRIQYVQEYKEINDIKSIVFTHLGEGIIAKTTNSKYTP
GKRVRSWIKYKNWRSVSGFLTSFNPQNSYYQIEGVDGEEHFPIGTFKHGFDKEEEQTLRT
FFKQKGIKKGKSWILEPSVCVDVHCLHADQGEMREPMFSRFRFDLSPEECTKDKLKWDLS
LFPTEVDFTHTDKELWPGKTKEDYLIYLRNIAPYLLPFIKEKKITLIRYPDGIYKESFFQ
KHLPDYAPDFVGEWVEAGEAFITCSNLPAFLWLGNQGALEFHIPFQKAGGKDPDEIVFDL
DPPGREQFPLAILAAQLLKHLLDELEVESFVKTSGNKGMQIHIPIEEGSMSYEETRRFTH
SLVKLLIKEKPDVFTIERLKKNRGNRLYLDYVQHAEGKTIVAPYSARATEKGTVAAPLFW
SEVKKGLTPEQFTIDTTIKRVQDLGCPFQDYAHARTRQPIEQMKTMFHKA
NT seq
1773 nt
NT seq
+upstream
nt +downstream
nt
atgatagagccaatgcttttgacgatggctgacgaacttccaacaggtgaaaaatggaga
tatgaaattaaatacgatggttttcgggtgatcttaacgtggacagaaaatggaataacc
ttgactagtcgtaatggaaaagatctaactgaacgtttccctgaaattataagtctttct
gagcaactcactcccccttccctgcctattacattggatggagaactggttatacttaat
acgccttttcaagccaatttttctcttctccagcaaagaggacgacttagaagttcagat
aaaatcaactattatgccacccggcgaccggcaacgttcatggcctttgatttcattaat
aaaccaaatgaaacctataagaagcgaaaacaacaattgaaggaaatcatccatcacctg
gacagtccaagaattcagtatgtacaagaatataaagagattaatgatattaagtccatc
gtctttacccatcttggtgaaggaattatcgctaaaacgaccaatagcaaatacacacca
gggaaacgagtgagaagttggattaaatataaaaattggagatcggtttctggctttcta
acttctttcaatcctcagaacagttattatcaaattgaaggtgtcgatggagaggaacat
ttccctattggaacctttaaacatgggtttgataaagaagaggagcagacattacggacc
tttttcaaacaaaaaggtattaaaaaaggcaagtcctggattcttgaaccaagtgtgtgt
gtcgatgtccattgtctccatgcggaccaaggtgagatgagagaaccgatgttttcaaga
tttcgatttgatctatcccccgaagaatgcacaaaggataaattaaagtgggacctgtcc
ctttttcctactgaagtcgattttacacacacagataaagaactgtggccagggaaaacg
aaagaagattatttgatttacttacgaaatatcgcgccttatctcctcccctttataaaa
gagaagaaaattacacttatccggtaccctgatgggatttataaagaatctttctttcaa
aagcatttgcctgattatgcccctgattttgtaggagaatgggttgaagcaggtgaggct
ttcatcacgtgttcaaacctgcctgcgtttctttggcttgggaatcaaggagcacttgaa
ttccatattccctttcagaaagctggcggaaaagatcctgacgagatcgtttttgatttg
gacccgcctggtagagaacaatttccattggcaatcctcgctgctcagctattaaagcac
cttctggatgagttagaagtagagagcttcgtcaagacatccggcaataaagggatgcaa
atccatattcctatcgaagaaggcagcatgtcttatgaggagactcgccgcttcacccat
tctttggtcaaattactcattaaagaaaaaccagatgtttttacgattgaacgattaaag
aagaatagaggcaaccgtttatatttagattatgttcaacatgcagaaggtaaaacgatc
gtcgccccatattctgcaagagcgactgaaaaaggaacggtagctgcccccttgttctgg
agcgaagtaaaaaaaggattaacccctgaacaatttacaatcgatacgacgataaaacgg
gtccaagacctgggttgtccatttcaagattacgcccatgcccgtacacgtcagccgatt
gaacagatgaagacaatgttccataaagcctaa
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