KEGG   Halobacillus mangrovi: HM131_02765
Entry
HM131_02765       CDS       T04799                                 
Name
(GenBank) DNA ligase D
  KO
K01971  bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
Organism
hmn  Halobacillus mangrovi
Pathway
hmn03450  Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:hmn00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03450 Non-homologous end-joining
    HM131_02765
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:hmn03400]
    HM131_02765
Enzymes [BR:hmn01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     HM131_02765
DNA repair and recombination proteins [BR:hmn03400]
 Prokaryotic type
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    Two-component NHEJ DNA repair complex
     HM131_02765
SSDB
Motif
Pfam: LigD_Prim-Pol DNA_ligase_A_M RNA_ligase DNA_primase_S DNA_ligase_A_C BLM10_N
Other DBs
NCBI-ProteinID: ARI75814
UniProt: A0A1W5ZR97
LinkDB
Position
complement(534370..536142)
AA seq 590 aa
MIEPMLLTMADELPTGEKWRYEIKYDGFRVILTWTENGITLTSRNGKDLTERFPEIISLS
EQLTPPSLPITLDGELVILNTPFQANFSLLQQRGRLRSSDKINYYATRRPATFMAFDFIN
KPNETYKKRKQQLKEIIHHLDSPRIQYVQEYKEINDIKSIVFTHLGEGIIAKTTNSKYTP
GKRVRSWIKYKNWRSVSGFLTSFNPQNSYYQIEGVDGEEHFPIGTFKHGFDKEEEQTLRT
FFKQKGIKKGKSWILEPSVCVDVHCLHADQGEMREPMFSRFRFDLSPEECTKDKLKWDLS
LFPTEVDFTHTDKELWPGKTKEDYLIYLRNIAPYLLPFIKEKKITLIRYPDGIYKESFFQ
KHLPDYAPDFVGEWVEAGEAFITCSNLPAFLWLGNQGALEFHIPFQKAGGKDPDEIVFDL
DPPGREQFPLAILAAQLLKHLLDELEVESFVKTSGNKGMQIHIPIEEGSMSYEETRRFTH
SLVKLLIKEKPDVFTIERLKKNRGNRLYLDYVQHAEGKTIVAPYSARATEKGTVAAPLFW
SEVKKGLTPEQFTIDTTIKRVQDLGCPFQDYAHARTRQPIEQMKTMFHKA
NT seq 1773 nt   +upstreamnt  +downstreamnt
atgatagagccaatgcttttgacgatggctgacgaacttccaacaggtgaaaaatggaga
tatgaaattaaatacgatggttttcgggtgatcttaacgtggacagaaaatggaataacc
ttgactagtcgtaatggaaaagatctaactgaacgtttccctgaaattataagtctttct
gagcaactcactcccccttccctgcctattacattggatggagaactggttatacttaat
acgccttttcaagccaatttttctcttctccagcaaagaggacgacttagaagttcagat
aaaatcaactattatgccacccggcgaccggcaacgttcatggcctttgatttcattaat
aaaccaaatgaaacctataagaagcgaaaacaacaattgaaggaaatcatccatcacctg
gacagtccaagaattcagtatgtacaagaatataaagagattaatgatattaagtccatc
gtctttacccatcttggtgaaggaattatcgctaaaacgaccaatagcaaatacacacca
gggaaacgagtgagaagttggattaaatataaaaattggagatcggtttctggctttcta
acttctttcaatcctcagaacagttattatcaaattgaaggtgtcgatggagaggaacat
ttccctattggaacctttaaacatgggtttgataaagaagaggagcagacattacggacc
tttttcaaacaaaaaggtattaaaaaaggcaagtcctggattcttgaaccaagtgtgtgt
gtcgatgtccattgtctccatgcggaccaaggtgagatgagagaaccgatgttttcaaga
tttcgatttgatctatcccccgaagaatgcacaaaggataaattaaagtgggacctgtcc
ctttttcctactgaagtcgattttacacacacagataaagaactgtggccagggaaaacg
aaagaagattatttgatttacttacgaaatatcgcgccttatctcctcccctttataaaa
gagaagaaaattacacttatccggtaccctgatgggatttataaagaatctttctttcaa
aagcatttgcctgattatgcccctgattttgtaggagaatgggttgaagcaggtgaggct
ttcatcacgtgttcaaacctgcctgcgtttctttggcttgggaatcaaggagcacttgaa
ttccatattccctttcagaaagctggcggaaaagatcctgacgagatcgtttttgatttg
gacccgcctggtagagaacaatttccattggcaatcctcgctgctcagctattaaagcac
cttctggatgagttagaagtagagagcttcgtcaagacatccggcaataaagggatgcaa
atccatattcctatcgaagaaggcagcatgtcttatgaggagactcgccgcttcacccat
tctttggtcaaattactcattaaagaaaaaccagatgtttttacgattgaacgattaaag
aagaatagaggcaaccgtttatatttagattatgttcaacatgcagaaggtaaaacgatc
gtcgccccatattctgcaagagcgactgaaaaaggaacggtagctgcccccttgttctgg
agcgaagtaaaaaaaggattaacccctgaacaatttacaatcgatacgacgataaaacgg
gtccaagacctgggttgtccatttcaagattacgcccatgcccgtacacgtcagccgatt
gaacagatgaagacaatgttccataaagcctaa

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