Heliomicrobium modesticaldum: HM1_3130
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Entry
HM1_3130 CDS
T00653
Name
(GenBank) conserved domain protein
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
hmo
Heliomicrobium modesticaldum
Pathway
hmo03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
hmo00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
HM1_3130
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
hmo03400
]
HM1_3130
Enzymes [BR:
hmo01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
HM1_3130
DNA repair and recombination proteins [BR:
hmo03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
HM1_3130
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
DNA_primase_S
Motif
Other DBs
NCBI-ProteinID:
ABZ84890
UniProt:
B0TIE9
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All DBs
Position
complement(2333967..2334470)
Genome browser
AA seq
167 aa
AA seq
DB search
MVFDLDPHESQSFQTVVEVALLLKSVLDTFGLTAYPKTSGASGMHIYVPVGDGYDYQTVR
KCAVTIAKFIEAVDPRVTLVRPIRDRGNRLYLDCWQIGRGKTVAGVYSLRPVPGAPVSTP
LLWSEVNRALQPKAFTMQTIFERLHRMGDLFRPVLEQKNDLAPLTKH
NT seq
504 nt
NT seq
+upstream
nt +downstream
nt
atggtctttgacctcgatcctcatgaaagccagtccttccagacggtggtagaggtggcg
ctgctcctgaaaagtgtcctcgataccttcgggctgaccgcttatccgaaaacgtcgggc
gcatcggggatgcatatttatgtgcctgtcggcgacggttacgattatcagaccgttcgg
aaatgcgccgtcaccatcgccaagttcattgaagctgtcgacccacgtgtgacactggtt
cgccccatccgtgatcgaggaaaccgtctctacctggactgctggcagatcggtcgagga
aagacggtggccggcgtatacagcctacgccccgtgccgggcgcacctgtatccactccc
ttgctctggtccgaggttaacagggcattgcaaccgaaggctttcaccatgcaaacgatt
tttgaacggctccatcgaatgggggacctcttccggccagttctggaacagaaaaatgac
ctggccccgctgacaaaacattaa
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