Halothiobacillus neapolitanus: Hneap_1978
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Entry
Hneap_1978 CDS
T01104
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
hna
Halothiobacillus neapolitanus
Pathway
hna03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
hna00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
Hneap_1978
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
hna03400
]
Hneap_1978
Enzymes [BR:
hna01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
Hneap_1978
DNA repair and recombination proteins [BR:
hna03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
Hneap_1978
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
UvrB_inter
DEAD
Helicase_C
CarD_TRCF_RID
MFD_D3
ResIII
UB2H
AAA_30
RecG_dom3_C
Motif
Other DBs
NCBI-ProteinID:
ACX96800
UniProt:
D0KVH0
LinkDB
All DBs
Position
2113162..2116641
Genome browser
AA seq
1159 aa
AA seq
DB search
MAPTRTVPFVAPKSSNDPLFLRSASFIGTAFSLAEFARRTPQALLVITPDSRQANELAEA
LALFDFPADIFPDWEVLPYDRFSPHQDLISDRLARLWHLPRTQSGITLIAAPTVLQRLAP
PSFVTGHGFLLKAGDTLDREAYRQQLTDAGYLAVSQVVQPGEFALRGGLIDVFPMGMSQP
VRIDLFDDEIETLRLFDPETQRSADPVAEITLLPAREFPLNEEGIALFRRNWRNRFEGDP
TRSPVYKQISEGLIPAGIETYLPLFFEHTGTLFDYLPKDALLFTLPGVDEALANFIEDTI
ARFTQRAGDVSHPILRPDELYQTAEQYQQQIKSWPRLITLDTNDPTMPQAIVLPHQPLPP
MSAPAPRLAQRGEAELLGLTTFIETFTGRVLVTAESPGRREALGELLQKAAHPVTVFEHF
GDWLRSDAGLGLLVSPIEHGAIIHLPDAPVALVTETDLFAERVAQRRKSSARTRDADALI
NNLNELAEGAPVVHETHGVGRFGGLVTLEMNGLAQEFLILYYAGDDKLYVPVSSLELISR
YTGGSEETAPLHRLGSGQWEKARKRAAEQVRDVAAELLDIHARRAAKRGQAQPTPEEEYA
RFANNFAFETTPDQQLAIDSVLADMARTQPMDRVVCGDVGFGKTEVAMRAAFVAVMNGKQ
VAVLVPTTLLAEQHLRNFRDRFAGWPINIEGLSRMSNAKKTTEVLASVASGKVDVVIGTH
KLLSDHLDFKELGLVIIDEEQRFGVRHKEQLKRLRAEVDLLTLTATPIPRTLNMALSGIR
DLSIIATPPRERLSVKTLLLRWDDAQIREAVQRELKRGGQVYFLHNEVRSIERMAKQLAD
LIPEARIAVAHGQLSERGLEQIMADFYHQRFNVLLSTTIIESGIDVPTANTILINRADKF
GLAQLHQLRGRVGRSHHRAYAYLITPEPAQMTPDAVKRLDALAALEELGVGFTLATHDLE
IRGAGELLGDGQSGQMHEVGYTLYMDLLDRAVKALKSGKQPDLAGPLERQTSEVDLGLPA
LIPADFVADVHTRLILYKRLANCADQTEIDRMKVELIDRFGLLPDATQTLIETHRLRLLA
RGIGIKKIECASGGARLVFGEQATIDPVKLVKLIQTEPNRYRLTADTLKVTRAENEPAWD
DLPARNQVIQQLIKQLVAQ
NT seq
3480 nt
NT seq
+upstream
nt +downstream
nt
atggcgcccaccagaaccgttccattcgtcgctccgaaatcatcgaacgacccgctattc
ctccgcagtgccagctttatcggcacagccttcagcttggccgaatttgcccggcgcacc
ccgcaggcacttttggtcatcacgcccgacagccgtcaagccaacgagttggccgaggcg
ctggctttattcgacttccctgcggatattttccctgactgggaggtgttgccctacgat
cgcttctcgccgcatcaggacctgatttccgaccggctcgcccgactctggcatttgccg
cgcacgcaaagtggtatcactctgatcgccgcgccaaccgtgttacagcgtctggcaccg
ccttcgttcgtcaccggccacggttttttgctcaaggcaggcgacaccctcgatcgtgag
gcctaccgccagcaactcaccgatgcggggtatctggcagttagccaagtggtgcaaccc
ggcgaatttgcgctgcgcggcggactgatcgatgtgttcccaatgggcatgagccagccg
gtgcggatcgatctgttcgacgatgaaattgaaactctgcggctgtttgatccggaaacc
caacgctcggccgatccggtcgcagaaatcaccctgcttcccgcgcgtgagttcccgctc
aacgaagaaggcattgccctgtttcgccgtaattggcgcaaccgcttcgagggtgatccg
acccgcagccctgtgtacaaacaaatcagcgagggcttgattccggcgggcatcgaaacc
tatctgcctttattttttgaacatacgggtaccctgttcgactatctgcccaaagacgcc
ctgttgtttacgctgcccggcgtcgatgaggcattagccaatttcatcgaagacaccatc
gcccgctttacccaacgcgccggggatgtcagccacccaatcctacgaccagacgagctt
tatcaaactgccgagcaataccagcaacagataaaaagctggccgcggctgatcacgctg
gatacaaacgacccgaccatgccgcaggccatcgtcctgccacatcaaccgctgccgccc
atgagcgcgccggcaccccgcttggcgcaacgaggagaagccgagctcctcggtctaaca
acatttatagagaccttcaccggacgtgttctggtgacggcggaaagcccgggccgacgc
gaagccttgggcgaattactacaaaaagcagcgcaccccgtcactgttttcgaacacttt
ggggattggttgcgcagcgatgcgggtctgggattgctggtctcacccatcgaacacggg
gccatcatccatctgcccgatgcgcccgtcgcgctggtgaccgaaaccgatctttttgct
gaacgcgtggcacagcgccgcaaatccagcgcgcgcacccgcgatgccgacgcgctgatc
aacaacttaaacgaactggccgaaggcgcacccgtggtgcatgaaacccacggcgtcggg
cgatttggtggcttagtcacgctggaaatgaacgggctggcgcaggagtttctgatcctg
tattacgccggagacgacaagctctacgtacccgtttcttcactggagctcatttcccgc
tacaccggcggcagtgaagaaaccgcgccgctgcataggcttggcagcggccagtgggaa
aaggcccgcaagcgcgccgccgaacaggtacgcgatgtggccgccgaactactggacatt
cacgcccggcgcgccgccaaacgcgggcaggcgcagcccacgcccgaggaagaatacgcc
cgattcgccaataattttgcctttgaaaccacgcccgatcagcaattggcgatcgatagt
gtgctggcagacatggcacgcacgcaaccgatggatcgggtggtatgcggcgatgtcggt
ttcggcaaaacggaagtcgccatgcgggcggccttcgtggccgtgatgaatggcaaacag
gtcgccgtgctggtgccgaccacgctgttggccgaacagcatttgcgtaatttccgcgac
cgtttcgccggctggccgatcaacatcgaaggcctatcccgcatgagcaatgccaaaaaa
accaccgaagtgctggccagcgtggcatccggcaaggttgatgtggttatcggcacgcac
aagctgctcagcgaccatttggatttcaaggaactgggcttggtcatcattgacgaggaa
caacggtttggcgtacgccacaaggaacagctcaagcgcctgcgcgccgaggtcgatcta
ctgactctcacggctacgccgattccacgcaccctgaacatggcgctctccgggatacgg
gatctgtcgatcatcgccacgccgccgcgtgaacggctgtcggtcaaaaccctgctcttg
cgctgggatgatgcccagattcgcgaagcggtacagcgcgaactcaagcgcggcggacag
gtgtattttctgcataacgaggtgcgcagcatcgagcggatggccaagcaattggccgat
ctgattcccgaagcgcggattgccgttgcccacggccagctctcggagcgcgggctggag
cagatcatggccgatttctatcatcagcggttcaatgtcctgctttcgaccaccatcatc
gaatcgggcatcgacgtgcccaccgccaacaccattttgatcaatcgtgctgataaattc
ggccttgcccaactgcaccaattgcgcgggcgggttggccggtcgcaccaccgtgcctat
gcctatctcatcacgccggaaccggcgcaaatgacccccgatgccgtcaaacgcctcgat
gccctggcggcactcgaagaactgggcgttggcttcacgctggccacacacgatctggaa
attcgcggtgcgggcgaactgctgggcgatggtcaatccggccagatgcatgaagtcggt
tacacgctgtacatggacctgctcgatcgcgccgtcaaagcgcttaaatcgggcaaacaa
cccgatctggccgggccgcttgaacgccagaccagcgaagtcgatcttggcctgcccgcg
ctcattcccgccgatttcgtcgccgatgtccacacgcgcttgattctgtacaagcgcctg
gcaaactgcgccgatcaaaccgagatagaccgcatgaaagtcgagctgatcgaccgcttc
ggcctgctgccggatgccacgcaaacgctgatcgaaacccatcggctgcgcttgctcgct
cgtggcatcggcatcaagaaaatcgaatgtgccagcggcggcgcgcgcctcgtgttcggt
gaacaggccaccatcgatccggtcaaactggtcaaactcatccaaaccgaaccgaatcgc
taccgccttaccgccgatacgctcaaggtcacacgagcggaaaacgagccagcttgggat
gatctgcctgcgcgcaaccaagttatccagcaactcatcaaacaactggtagcccaatga
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