Hyphomonas neptunium: HNE_0386
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Entry
HNE_0386 CDS
T00397
Symbol
ligA
Name
(GenBank) DNA ligase, NAD-dependent
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
hne
Hyphomonas neptunium
Pathway
hne03030
DNA replication
hne03410
Base excision repair
hne03420
Nucleotide excision repair
hne03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
hne00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
HNE_0386 (ligA)
03410 Base excision repair
HNE_0386 (ligA)
03420 Nucleotide excision repair
HNE_0386 (ligA)
03430 Mismatch repair
HNE_0386 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
hne03032
]
HNE_0386 (ligA)
03400 DNA repair and recombination proteins [BR:
hne03400
]
HNE_0386 (ligA)
Enzymes [BR:
hne01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
HNE_0386 (ligA)
DNA replication proteins [BR:
hne03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
HNE_0386 (ligA)
DNA repair and recombination proteins [BR:
hne03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
HNE_0386 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
HNE_0386 (ligA)
MMR (mismatch excision repair)
DNA ligase
HNE_0386 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
HNE_0386 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
BRCT
HHH_2
DNA_ligase_ZBD
HHH_5
PTCB-BRCT
Bep_C_terminal
RUBY_RBDX
Motif
Other DBs
NCBI-ProteinID:
ABI76222
UniProt:
Q0C577
LinkDB
All DBs
Position
378661..380766
Genome browser
AA seq
701 aa
AA seq
DB search
MSGDKPVEALSEAEAAAELERLARAIADADAAYYQNDAPELTDADYDALRQRNLAIEARF
PALKREDSPTDRVGAEAGDGFAKARHSAPMLSLDNAFTDEDVADFAVRIRRFLGLAPEET
LAFTAEPKIDGLSLSLTYENGKLMRAATRGDGQTGEDVTANARTLGDIPVKLKGKGWPER
IEVRGEVYMAKSAFADLNAREAEAGRKVFANPRNAAAGSLRQLDVEITKSRPLRFFAYAW
AAASEPFAQTQFEAVKAFADWGFVTNSRMIRIKTVEEVLSYYQEIEAERASLEYDIDGVV
YKVDRLDWQQRLGFVSRAPRWAIAHKFPAEKAVTTLLGIDIQVGRTGSLTPVARLEPVTV
GGVVVSNATLHNEDEIARLGVKPGDKVEIQRAGDVIPQVLRVVEPGQGAPWAMPDTCPVC
GSAAVREIDDAGRADVRRRCTGGLICPAQAVERLKHFVSRKALDIDGLGEKQVLLFHEKG
AVKAPQDIFRLKKNIEAAGLPPLEEWEGFGAQSARKLYSAIDARRKVPFARFLNGLGIRY
VGQTTSAQFARSFLSWQSFWAAVKAAEEGGIESEAYNELIGIDGIGQAAARSLMAFEGEP
HNREMLAALLEEVEVEDEIPAETGSPVTGKTVVFTGTLEKMTRDEAKARASALGAKVAGT
VSAKTDIVIAGPGAGSKLVKAEQLGLAVMTEDEWLALIGET
NT seq
2106 nt
NT seq
+upstream
nt +downstream
nt
atgagcggggacaaaccagtcgaggcgctgagcgaagcggaagcggcggcagaactggag
cggctcgcgcgggcaattgcggacgctgacgcggcctattaccagaatgatgcgcccgag
ctgaccgacgctgactatgacgcgctgcgccagcgcaacctcgccatcgaggcgcgcttt
ccggcgctgaagcgcgaggattcgccgaccgaccgggtgggcgccgaagccggagacggc
tttgccaaggcgcgtcacagcgcgccgatgctttcgctcgacaatgcgttcacggatgaa
gacgtcgcagacttcgcggttcgcatccggcggtttctggggctggcgccggaggaaacg
ctcgcctttaccgcagaacccaagatcgacgggctgtcgctgagcctgacctatgaaaac
ggaaaactgatgcgcgcggcaacgcgcggcgatggccagaccggtgaggacgtgaccgcg
aacgcccgcacgctgggcgacattccggtgaagctgaaaggcaagggctggccggagcgg
atcgaggtgcgcggcgaggtctatatggcgaaatctgcctttgccgatctcaacgcgcgc
gaggcagaggccgggcggaaggtgtttgccaatccgcgcaatgcggccgccgggagcctg
cgccagctggatgtcgagattaccaaatcgcggcctttgcgctttttcgcctatgcctgg
gcggcggcgagcgagccttttgcgcagacccagtttgaggctgttaaggcgtttgccgat
tggggttttgtcaccaattcccgcatgatccgtatcaagacggtagaggaagttctctcc
tattatcaggagatcgaggcggaacgggcgagcctcgaatacgatattgacggggtggtc
tataaggtcgaccggctggactggcagcagcggctgggctttgtcagccgcgcgccgcgc
tgggctattgcgcacaagtttccggccgagaaggcggtcacaacgctgctgggcatcgac
attcaggtggggcggacagggtcgctgacgccggtggcgcggctggagccggtgacggtg
ggcggtgtcgtggtctcaaacgccacactgcataatgaagacgaaatcgcgcgcctcggc
gtcaagcccggagacaaggttgagattcagcgggcgggcgatgtcatcccgcaggtgctc
cgcgtggtcgagccggggcagggtgcgccctgggcgatgccggacacatgcccggtctgt
ggctcggcagctgtgcgcgagattgatgatgccgggcgcgccgatgtgcgccggcgctgc
acgggcgggctgatctgcccggcccaggcggtcgagcggctcaagcatttcgtctcgcgc
aaggcgctcgatattgacgggcttggcgagaagcaagtgctgctgttccatgagaaaggc
gcggtgaaagcgccccaggatatattccgcctgaagaagaatatcgaggcggccggcctg
ccgccgctggaggaatgggagggctttggcgcgcagtctgccaggaagctttacagcgcg
attgatgcgcgccgcaaagtgcccttcgcgcggtttctgaacggccttggcatccgctat
gtcggccagacgacctcggcccagtttgcccgcagtttcctcagctggcagagcttctgg
gcggcggtgaaagcggccgaagagggcggcatcgagagcgaggcgtataatgagctcatc
ggcattgacggcatcggccaggccgcggcccgctcgctgatggcgtttgagggcgagccg
cacaatcgcgagatgctggccgcgctgctggaagaggttgaggtggaggacgagatcccc
gccgagaccggcagcccggtgacgggtaagacggtggtgttcaccggcacgctggagaag
atgacgcgcgacgaggccaaggcacgggcgagcgcgctgggcgcgaaggttgccggcacg
gtttcggccaagacagatattgtgattgccgggccgggcgcaggctcaaagctcgtcaag
gccgagcagctcggcctcgcggtgatgacggaagatgaatggctcgccctgatcggggag
acctga
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integrated database retrieval system
