Hyphomicrobium nitrativorans: W911_06870
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Entry
W911_06870 CDS
T02943
Name
(GenBank) DNA polymerase
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
hni
Hyphomicrobium nitrativorans
Pathway
hni03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
hni00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
W911_06870
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
hni03400
]
W911_06870
Enzymes [BR:
hni01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
W911_06870
DNA repair and recombination proteins [BR:
hni03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
W911_06870
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
LigD_N
DNA_primase_S
Motif
Other DBs
NCBI-ProteinID:
AHB48166
UniProt:
V5SB92
LinkDB
All DBs
Position
complement(1435081..1436703)
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AA seq
540 aa
AA seq
DB search
MARSGRKSERSRNTLLPYRAKRDFTRTEEPSGAQNVRPGSYPRFVIQKHDATRLHYDLRL
EIDGAFKCWAVTRGPSLDPGEKRLAVEVEDHPLDYGDFEGTIPKGEYGGGTVMVWDRGFW
LPEGDKPVRDALRDGELKLVLAGSKLQGGWVLVRMKRDRTGSKRNNWLFIKHRDIYARGG
DNDALLKQDRSVASDRTMAEIAKGTGRAPEAFMLDGRRRGKADAIWHSQPIEKPRSQDAT
AVLSVKISNPDRVLWPRTKTNPATTKRDLARYLEAIGPWMIGHLAGRPCSVVRAPDGIKG
EIFFQRHALQRTPEGVTEVEVGGDRKPYIQIDSVEGLVGMAQMSALEFHPWNSAPDATDV
PGRLVFDLDPGSGVAFDDVVAAAIELRGRLEKLGLVPFCKTTGGKGLHVTVPLDPKRSHG
IGWDEAKMFAQTVCAQMAHDSPDRYLIKMTRSLRRRRIFLDYLRNDRMATAVAPLSPRAR
PGALVSMPLTWGQVRRGLDPSRFTLRTVPKLIARSEAWRDYDSGARSLKDAIRRLVGAKR
NT seq
1623 nt
NT seq
+upstream
nt +downstream
nt
atggcgcgctcgggtaggaagtcggagcgctcccgcaacacgctcctgccatatcgtgca
aagcgcgacttcacccgaactgaggagccgagcggcgctcagaacgtgcgcccaggctcg
tacccgcgcttcgtgatccagaaacacgacgctactcggcttcattatgatcttcgcctt
gagatcgacggagctttcaaatgttgggcggtgacgcgcggcccttctctcgatccaggt
gagaagcgcttagcggttgaggttgaagatcacccgctcgactacggcgacttcgagggc
acgataccgaagggcgagtatggcggcggcacggtaatggtttgggaccgagggttctgg
ctgccggagggcgacaagcctgtgcgagacgcgcttcgcgacggcgaacttaagctggtc
cttgcaggatcgaaacttcaaggcgggtgggtgctggtgcgcatgaagcgcgaccgcacc
ggaagcaagcgcaacaactggcttttcataaagcatcgcgacatctatgcgcggggcggc
gataacgatgcgctcttgaagcaggatcgttccgtggcatcggatcgaacgatggccgaa
atcgcgaaaggcaccgggcgcgcgcccgaagcattcatgctcgacggacgtcggcgtgga
aaggccgatgcgatttggcattcacagccaattgagaagccacggtcgcaggatgcaacc
gccgtgctcagcgtgaagatttcaaaccccgatagagtgctgtggccccgcacgaagacc
aatcctgcgacgaccaaacgggatctcgcgcgttacctggaagcgatcgggccgtggatg
atcggccatctcgcgggtcggccgtgctcggtcgtgagggcgccggacggcataaaaggt
gaaatcttctttcagcgccacgcgctgcaacgaacgcccgagggtgtgactgaggtggag
gtcggcggcgacagaaagccatacattcagatcgacagtgtcgaaggtctggtaggcatg
gcgcagatgtcggcgctcgaatttcatccttggaattcagccccagacgcaactgacgtt
cccggccgactggttttcgatctcgatccgggatcgggcgtcgcatttgatgacgttgtt
gctgccgcgatcgagctacgcggcaggctagaaaagctcggcctcgtgcccttctgcaag
accacgggagggaaagggctgcacgtcaccgtgccactcgatccgaagcgctctcacggc
atcgggtgggatgaagccaagatgtttgctcaaaccgtctgcgctcagatggcccatgac
agccccgaccgttacctgatcaagatgacgaggtctctgagacgtcggcgcatctttctc
gactacctgcgcaacgaccgcatggcgaccgccgtggcgcccctctctccacgcgcgcgg
cccggcgcgctcgtgtcgatgccgctcacctggggccaagtgcgtcgcgggcttgatccc
tcgcgcttcacgctccgcactgtgccgaagttgatcgcgcgatccgaagcatggcgtgac
tacgacagcggcgcccgctcgttgaaggacgcgatccgccgcctcgtaggcgcaaagcga
tga
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