Hyphomicrobium nitrativorans: W911_10335
Help
Entry
W911_10335 CDS
T02943
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
hni
Hyphomicrobium nitrativorans
Pathway
hni03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
hni00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
W911_10335
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
hni03400
]
W911_10335
Enzymes [BR:
hni01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
W911_10335
DNA repair and recombination proteins [BR:
hni03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
W911_10335
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
DEAD
UvrB_inter
Helicase_C
CarD_TRCF_RID
MFD_D3
AhtL-like_1st
UB2H
SecA_DEAD
RecG_dom3_C
Motif
Other DBs
NCBI-ProteinID:
AHB48700
UniProt:
V5SF81
LinkDB
All DBs
Position
2146238..2149714
Genome browser
AA seq
1158 aa
AA seq
DB search
MSERADLIFTGVPEGLDALVLARLVEEATRADAPGVLVHVARDDRRLEALEGQLRFFAPK
LRVSAFPAWDTVPYDRVGPNAEIVGKRITTLSRFALGVKEPVVVLTTVNAVLQRVPPKSY
VRNAMKSFVPGQRVDLDRLVQSLSLAGYTRTGTVMEQGEMAVRGGIVDLFPPGRLNPIRL
DFFGDTLESIKTFDAETQRTSKSVKKLVLMPVSEVAFGDAAVALFRSRYVELFGGATGDD
PLYEAISAGHRYSGEEHWLPLFHETLETLFDYVGDAPVSFDHLADEAVAHRFDQINEHYL
ARTEGLEAERFGAPPYKPVPPQQMFLDKAAWGKALQGRKIVRLTPFEMTEGEGVRPWRGK
GGRSFAPERQNPDANVFDAVVGHVKQIQANHRRALIAAWTPGARERLSSLLADHGLKAVA
KVEGYADALALEPGVTGLAVLGIEQGFETPELAVIAEQDILGDRLVRPRRKAKRAADVLT
EATSLSVGDLVVHADHGIGRFAGLKTITALGAPHDCLELKYHGGDTLYLPVENIELLSRF
GSDDGSTQLDRLGGVAWQSRKAKLKKRLREMAGELIKIAALRQLREAPVLAPPASAYDEF
VASFPYEETEDQAASIEAVLGDLQAGRPMDRLVCGDVGFGKTEVALRAAFVTAMNGLQVA
IVVPTTLLARQHTQTVRERFKGLPLKIAQASRFVSPKELGEVKDGIKTGTVDIVVGTHAL
LGKQIEFQRLGLIVIDEEQHFGVTHKERLKQLREDVHVLTLSATPIPRTLQLALTGVREL
SLITTPPVDRLAVRTYISPFDPVVLTDALKRERDRGGQTYYVAPHISDLDSVAEFLAEAV
PHLKVARAHGQLSPGELEDVMTAFYEGKYDVLLSTAIVESGLDVPNANTLIVHRADMFGL
AALYQLRGRVGRSKRRAYAYFTTPPGKALTEGAEKRLKVLQSLDTLGAGFSLASHDLDIR
GAGNLLGEEQSGHIREVGFELYQSMLEEAVASMKGGDLDDAADKWSPEIAIGVSVLIPES
YVTDLQLRLGLYRRLSSLETRAEIDAFAAELVDRFGELPAEVDHLLDVMEIKGLCRAAGI
ARVDAGPKGAVVTFHRNTFANAQGLATFLQLSRGQARLQPDHKLVFKGAWDQADVRFKGV
RQLVSALANIAAKGAEAA
NT seq
3477 nt
NT seq
+upstream
nt +downstream
nt
atgagcgagcgagcggacttgatttttacgggcgtgccggaggggctggacgcgctcgtg
ctcgcgcgccttgtcgaggaagcgacgcgggcggatgcgccgggcgttctggtccatgtc
gcgcgcgacgaccggcggctcgaagcgctcgaagggcagctccgctttttcgcgccgaag
ctccgggtttccgcgttccccgcgtgggataccgtgccttacgaccgcgtggggccgaat
gcggagatcgtgggcaagcgcatcacgacgctgtcgcggtttgcgctgggcgtgaaagag
cccgtcgtggttctcacgaccgtcaatgccgtgctgcagcgcgtgccgccgaaatcctac
gttcgcaacgcgatgaagagttttgtgcccggccagcgggtggatctcgaccgcctggtg
caaagcctgtcgcttgccggctatacgcgcaccggcaccgtgatggagcagggcgagatg
gcggtgcggggcggcatcgtcgatctcttcccgccggggcgactcaatccgatccggctc
gacttcttcggcgacacgctcgaaagcatcaagacgttcgacgccgagacgcagcggaca
tcgaaatccgtcaagaagctcgtgctgatgccggtgtcggaggtcgcgttcggggatgcg
gccgttgcgctgttccgctcgcgctatgtggagctgttcggcggggcgacgggcgacgat
ccgctctatgaggccatcagcgcggggcatcgctattcgggcgaggagcactggctgccg
ctgttccacgagacgctggagacgctgttcgactatgtaggcgacgcgccggtgagcttc
gatcatctggcggatgaagcggtggcgcatcggttcgatcagatcaacgagcattatctg
gcccgcaccgaaggtctcgaagccgagcggttcggcgcgccgccctataagcccgtgccg
ccccagcagatgttcctcgacaaggccgcgtgggggaaggcgcttcaagggcgcaagatc
gtgcggctgacgccgttcgagatgacagagggcgagggcgtgcgcccgtggcgcggtaag
ggcgggcgctcgttcgcgcccgagcggcagaaccccgacgcgaacgtgttcgatgcggtt
gtcggtcatgtgaaacagatccaggcgaaccatcgccgcgcgttgattgcggcgtggacg
ccgggcgcgcgggagcggctgtcgtcgctgcttgcggaccacgggctcaaggcggtggcg
aaagtcgagggctatgcggatgcgctggcgctggagcccggcgtgacgggtctggcggtg
ctgggcatcgagcagggtttcgagacgccggaactcgcggtcatcgccgaacaggacatt
ctgggcgaccggctcgtcaggccgcggcgcaaggcgaagcgtgctgccgacgtgctgacg
gaagcgacgagcctttcggtcggcgatctcgtcgtgcacgcggatcatggcatcgggcgg
ttcgcgggcctcaagacgatcacggcgttgggcgcgccgcacgattgcctcgaactcaag
tatcacggcggcgacacgctctatctgccggtcgagaacatcgagctgctgtcgcgcttc
ggctccgacgacggctcgacgcagctcgatcgtctcggcggcgtggcgtggcaatcgcgc
aaggcgaagctcaagaagcgcctgcgcgagatggcgggcgaactgatcaagatcgcggcg
ctgcgccagcttcgcgaggcgccggtgctcgcgccgcctgcgagcgcttacgacgagttc
gtggcgagcttcccctacgaggaaaccgaagaccaggccgccagcatcgaggcggtgctg
ggagatttgcaggcgggccgtccgatggaccggctcgtgtgcggcgacgtgggcttcggc
aagacggaggtcgcgctcagggccgcgttcgtgaccgcgatgaacgggctgcaagtcgct
atcgtggtgccgacgacgctgcttgcgcgccagcacacgcagaccgtgcgcgagcgcttc
aaggggctgccgctgaagattgcgcaggcgtcacgcttcgtgtctccgaaagagcttggc
gaggtcaaggacggcatcaagaccgggaccgtcgacatcgtggtcggcacgcacgcgctg
ctcggcaagcagatcgagtttcagcggctcgggcttatcgtgatcgacgaggaacagcac
ttcggtgtgacgcacaaggagcggctgaagcagctccgcgaggacgtgcacgtgctgacg
ctgtccgcgacgccgatcccgcgcacgctgcaacttgcgttgacgggcgtgcgggagctg
tcgctgatcaccacgccgccggtggaccggctcgcggtccgcacctacatctcgccgttc
gatcccgtggtgctcacggatgcgttgaagcgcgagcgcgaccgaggcgggcagacgtat
tacgtcgcgccgcatatctccgacctcgacagcgtggccgagttcctggccgaagccgtg
ccgcatctcaaagtggcgcgcgcgcacggacagctttcgccgggcgaactcgaagacgtg
atgacggcgttctacgagggcaagtacgacgttctcctctcgacggccatcgtggaaagc
ggcctcgacgttccgaacgcgaacacgctgatcgtgcatcgggccgatatgttcgggctt
gcggcgctctatcagttgcgcgggcgcgtgggccggtcgaagcggcgcgcgtacgcctac
ttcacgacgccgccggggaaggcgctcaccgaaggcgcggagaagcggctcaaggtgctg
cagtcgctcgatacgctgggcgcgggcttctcgctcgcctcgcacgatctcgacatccgc
ggcgctggcaacctgctcggcgaggagcagtcggggcatatccgcgaggtgggcttcgag
ctttaccagtcgatgctggaagaggcggttgcctcgatgaagggcggcgacctggacgac
gctgccgacaaatggagcccggagatcgcaatcggcgtttcggtgctgatcccggaaagc
tacgtcacggatctgcaactccggctcgggctttaccggcgtctctcgtctctcgaaacg
cgcgcggagatcgacgcgttcgcggcggagctggtggaccgcttcggcgagctgccggcg
gaggtcgatcacctgctcgatgtcatggagatcaaggggctgtgccgggctgcgggcatt
gcgcgcgtcgatgcggggccgaagggcgccgtcgtcaccttccatcgcaatacgttcgcc
aacgcgcaggggctggcgacgttcctgcagctctcgcgcgggcaggcgcggttgcagccg
gaccacaagctcgtgttcaagggtgcgtgggatcaggcggacgtgcgcttcaagggcgtg
cgccagctcgtctcggccctcgcgaacattgcggcgaagggcgccgaggcggcttag
DBGET
integrated database retrieval system
