KEGG   Halobacterium noricense: LT974_05030
Entry
LT974_05030       CDS       T07823                                 
Name
(GenBank) ATP-dependent DNA ligase
  KO
K10747  DNA ligase 1 [EC:6.5.1.1 6.5.1.6 6.5.1.7]
Organism
hno  Halobacterium noricense
Pathway
hno03030  DNA replication
hno03410  Base excision repair
hno03420  Nucleotide excision repair
hno03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:hno00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    LT974_05030
   03410 Base excision repair
    LT974_05030
   03420 Nucleotide excision repair
    LT974_05030
   03430 Mismatch repair
    LT974_05030
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:hno03032]
    LT974_05030
   03400 DNA repair and recombination proteins [BR:hno03400]
    LT974_05030
Enzymes [BR:hno01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     LT974_05030
    6.5.1.6  DNA ligase (ATP or NAD+)
     LT974_05030
    6.5.1.7  DNA ligase (ATP, ADP or GTP)
     LT974_05030
DNA replication proteins [BR:hno03032]
 Eukaryotic type
  DNA Replication Elongation Factors
   Other elongation factors
    LT974_05030
 Prokaryotic type
   Elongation factors (archaeal)
    Other elongation factors
     LT974_05030
DNA repair and recombination proteins [BR:hno03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    Long Patch-BER factors
     LT974_05030
   NER (nucleotide excision repair)
    Other NER factors
     LT974_05030
   MMR (mismatch excision repair)
    Other MMR factors
     LT974_05030
SSDB
Motif
Pfam: DNA_ligase_A_M DNA_ligase_A_N DNA_ligase_A_C RNA_ligase EccE
Other DBs
NCBI-ProteinID: UHH26301
LinkDB
Position
complement(908033..909751)
AA seq 572 aa
MEFGSFAAHAADIEATDADLDVVTKVAALFGEAGDDLAVVARFVQGRVFPAHSETKLDIG
PRLCYEALARAASTNVAVEDVEDRLAETGDIGEVAGNLDLGGQAGLGAFAADSGDDDLTV
AEVYEDLTALAAAEGDGSQDEKVTLLFGLFNDCSGEEARYLARLVLGEMRIGVGEGAVRD
AIAEAFDVPVEAAERALQVSNDYGLVAVTARDEGVDGLDTMHLEVGRPVQAMLAQAGTVT
DALDSWDEAAVETKFDGARVQVHWDGEEVSLYSRNMEDVTDALPELVEFVEDHVDAPVIL
DGEAVAVDDDGSPLPFQEILKRFRRKHDVEQMRDEIRVELNAFDCLHAGVPESGGKSGAR
RTTSDGGEDLLDEPFRERHQRLRDVVDDDSAVSEIQVTDDADEIAAFEERALEAGHEGIM
LKDPDAAYTPGDRGKHWLKRKPDVETLDLVATGAEWGEGRRASFLGTFMLSARDEATGEY
ATIGKVATGITDEELADLTDRLEPHVRSEDGQEVDLEPAVVFEVGYEEIQTSPTYESGYA
LRFPRFVTVREDKPPENADTIERVERLAEQQG
NT seq 1719 nt   +upstreamnt  +downstreamnt
atggaattcggttcgttcgccgcgcacgccgccgacatcgaggcgacggacgcggacctc
gacgtcgtcacgaaggtcgcggccctgttcggcgaggccggcgacgacctggcggtggtc
gcgcggttcgtccaggggcgggtgttcccggcgcactcggagacgaaactcgacatcggg
ccgcggctctgctacgaggcgctggcccgcgcggcgtcgacgaacgtcgccgtcgaggac
gtcgaggaccgactcgcggagaccggcgacatcggcgaagtcgccggaaacctcgacctc
ggcgggcaggcgggactcggcgcgtttgcggcagacagcggcgacgacgacctgaccgtc
gccgaggtgtacgaggacttgaccgcgctcgcggccgccgagggcgacggcagccaggac
gagaaggtgacgctcctcttcgggctgttcaacgactgctcgggcgaggaggcacgatac
ctcgcgcgcctcgtgctcggggagatgcgcatcggcgtcggcgagggcgcggtccgggac
gccatcgcggaggcgttcgacgtccccgtcgaagccgcggagcgcgcgctccaggtgtcg
aacgactacgggctcgtggccgtcaccgcccgcgacgagggcgtggacggcctcgacacg
atgcacctagaagtcgggcggcccgtgcaggcgatgctcgcacaggccggtaccgtcacc
gacgccctcgactcgtgggacgaggctgccgtggagacgaagttcgacggggcgcgcgtc
caggtccactgggacggcgaggaggtgtcgctgtactcgcggaacatggaggacgtcacg
gacgcgctccccgagctcgtggagttcgtcgaggaccacgtcgacgcgcccgtgattctg
gacggcgaggcggtggcggtcgacgacgacgggagcccgctgccgttccaggagattctc
aagcgcttccggcgcaagcacgacgtcgagcagatgcgcgacgagattcgcgtcgaactg
aacgccttcgactgcctgcacgcgggtgtccccgagtccggcggaaaatcgggggctcgt
cggacgacgtccgacggcggcgaagacctgctggacgagccgtttcgggagcgccaccag
cgcctccgcgacgtcgttgatgacgactcggcggtctccgaaattcaggtcacggacgac
gccgacgagattgcggccttcgaggagcgcgccctcgaagcgggccacgagggtatcatg
ctgaaagacccggacgcggcgtacacgcccggggaccgcgggaagcactggctgaagcgc
aagcccgacgtggagacgctggacttggtcgcgacgggcgcggagtggggcgagggccgg
cgtgcgtcgttcctcgggacgttcatgctctccgcgcgcgacgaggcgaccggcgagtac
gcgaccatcgggaaggtcgcgaccggcatcaccgacgaggaactcgcggacctcacggac
cgcctggagccacacgtccgcagcgaggacggccaggaagtcgacctcgaacccgccgtc
gtcttcgaggttggctacgaggagattcagacgtcgccgacctacgagtcggggtacgcg
ctccggttcccgcggttcgtcaccgtccgcgaggacaaacccccggagaacgccgacacc
atcgagcgcgtcgaacgcctcgccgagcagcagggctga

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