Hemiscyllium ocellatum (epaulette shark): 132824156
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Entry
132824156 CDS
T09720
Symbol
ighmbp2
Name
(RefSeq) DNA-binding protein SMUBP-2
KO
K19036
ATP-dependent RNA/DNA helicase IGHMBP2 [EC:
5.6.2.5
5.6.2.3
]
Organism
hoc
Hemiscyllium ocellatum (epaulette shark)
Brite
KEGG Orthology (KO) [BR:
hoc00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
hoc03009
]
132824156 (ighmbp2)
03012 Translation factors [BR:
hoc03012
]
132824156 (ighmbp2)
Enzymes [BR:
hoc01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
132824156 (ighmbp2)
5.6.2.5 RNA 5'-3' helicase
132824156 (ighmbp2)
Ribosome biogenesis [BR:
hoc03009
]
Eukaryotic type
Other ribosome biogenesis factors
132824156 (ighmbp2)
Translation factors [BR:
hoc03012
]
Eukaryotic type
Initiation factors
Initiation associated factors
132824156 (ighmbp2)
BRITE hierarchy
Motif
Pfam:
AAA_11
AAA_12
SMUBP-2_HCS1_1B
R3H
AAA_30
AAA_19
zf-AN1
Viral_helicase1
DEAD
ResIII
nSTAND3
Helicase_RecD
UvrD-helicase
AAA_22
AAA_16
IstB_IS21
Flavi_DEAD
AAA
AAA_25
ATPase
UvrD_C_2
PhoH
T2SSE
ABC_tran
Zot
SRP54
NTPase_1
ASD2
SLFN-g3_helicase
Motif
Other DBs
NCBI-GeneID:
132824156
NCBI-ProteinID:
XP_060694412
LinkDB
All DBs
Position
18:complement(25523778..25605418)
Genome browser
AA seq
1021 aa
AA seq
DB search
MENFVSQSLELLQEERAAEIEETRAWQENVSVKELQRRGVCLLKLQVSSQRTGLYGRFVV
SFEPRKFEASAALPSNNFSSGDIVGLYDSQGSTSLDQLASGIVTRITQNSITVAFDEPSD
QLNFDTGSSFTLLKLANDVTYKRLTRALKALSQYHAGPVSKLIDILFGTSEPSSPSEILK
IPELYNPSLDDSQREAIHFALSQKEVAIIHGPPGTGKTTTIVEIILQAIKQGLKVLCCAP
SNVAVDNLVERLAQFKTPILRLGHPARLLESIHRHSLDAILANSDNTQIVMDIRKDIDQA
FAKLKITQERGEKAHFRGEIKTLRKELRTREEAAIVQILKKASVVLATNTGASNDGPLKL
LSDDYFDLVVIDECAQAVEASCWIPLMKAPKCILAGDHKQLPPTIISHKAAANGLSLSLM
ERLIQRFGEQMVRMLTVQYRMHSSIMEWASKQMYCGRLTAHKMVAHHLLKDLPGVSLTEE
TKVPLLLIDTAGCGLLELDEEDEQSKGNSGEVQIVTLHTQALIEAGVRPQDIAVIAPYNL
QVQLLRKELSKKYPELEIKSVDGFQGREKEAVILSLVRSNRTGEVGFLAEDRRINVAVTR
ARRHLMVVCDTRTVSTHLFLKSLVDYMTEHGETRTAFEYCDDIVSENYSRPAPRAEHRRA
KDSSDARRNNGSSTSDRSAASLKTHKLTQNQPTQKLECKMKVSNDSHSLKQKKDASPGTL
HQPAKTANVKDNSEKLREQIMQFMEDIARTRFEFPSSLNSHDRLLVHQIAEEFGLEHFSI
GESKARFIVIAKSETQSPVDGQPVQMMLEVTRKSSSPSPHIAEENERTVTEIEGPQDCTP
SVSQSKVDFKALYLERMQREQAKREMAKPKQHSSTTASLKSKNKKHIEKGKVSTKEAAAS
NTDEDFDALIAETIKANSVCAFLKCKASILTLGQHCIHCNKHYCLSHHIPEVHGCGGSAK
AHARKLISREGILYAGSGTKDHSLDPVKKAHLQRRLGKKIEQLASQRGAKKETTKKNFGE
L
NT seq
3066 nt
NT seq
+upstream
nt +downstream
nt
atggaaaattttgtgtctcaaagtttggagctattacaagaagaaagagctgctgaaatt
gaagagaccagggcttggcaggaaaacgtctctgttaaagaactccagcgacgaggggtc
tgcctgctaaagctgcaagtatcaagccagagaaccggactgtatggacgctttgttgtt
agctttgaaccaagaaagtttgaggccagtgcagccctacccagcaataacttcagctct
ggggatattgtgggtctgtatgacagccaaggctccacttcattggaccaacttgcatct
ggcattgtgacgcgcatcacacaaaactctatcactgtagcttttgatgaacccagtgat
cagttaaacttcgacactggctcttcctttacacttctgaaactcgctaacgatgtaaca
tacaaaagattgacacgtgctttaaaggccttgagccagtatcatgctggacctgtttct
aagctcatcgacatcctgtttggcacttctgagccaagttctccctcagaaattctaaaa
atcccagaactgtacaatcctagcctggatgactctcaaagagaagcaatacattttgca
ctctcacagaaggaagttgcaattatccatgggcctcctggtactggaaagacaaccaca
attgtggaaataattctacaggctataaagcaaggtctgaaggtgttgtgctgtgctccc
tcgaacgttgctgttgacaaccttgttgaacgtctagcgcaatttaaaacaccgattttg
cgtttaggtcaccctgcacgactgcttgagtccatccatcgtcattctttggatgcaata
ttagctaacagtgacaacacccaaatagtaatggacatccggaaggatattgatcaggct
tttgcaaaattgaaaataacacaggagagaggagagaaagcgcattttcgtggtgaaatc
aagactttgagaaaggagctgagaacaagggaggaggcagctatcgtacaaatactaaaa
aaagccagtgttgtgttggcaactaacacaggtgcctctaatgatggtccattaaaactt
ctgtcagatgattactttgatcttgtggtgattgatgaatgtgcacaggcagtggaagca
agttgttggataccattaatgaaagccccaaaatgcatcctggctggggatcacaaacaa
cttcctccaaccatcatttctcacaaagctgcagctaatggcctatcgctcagcttgatg
gagcgactaatccagagatttggtgaacagatggtgagaatgctgactgtacagtatcga
atgcatagttccataatggaatgggcctccaaacagatgtactgtggacgactcacagct
cacaagatggtggcgcatcacttgctaaaggatctgcctggagtttctttgacagaagag
acaaaggttccactgcttctgatagacaccgcaggatgtggcttgcttgaacttgacgaa
gaagacgaacaatccaaaggaaatagtggggaggttcaaattgtgactctgcatactcaa
gccctgattgaagctggtgtccgcccacaggatattgctgtgatagctccgtataatttg
caggtccaactcctgaggaaagaattgtctaaaaagtatccggaactggaaatcaagtct
gttgatggtttccaaggaagagaaaaggaggcggttattttatcacttgtgagatccaac
agaacaggtgaggtgggctttctagctgaagaccgaagaataaacgtagcagttacccgt
gcgcgccgccacttgatggtggtttgtgacacgcggacagtcagcactcacctgtttttg
aaatccctggttgactacatgactgaacatggggaaacgcggactgcttttgagtactgt
gatgatattgtgtctgaaaattattccaggccagcccctcgggctgaacacaggagagca
aaagattcttcagatgcacgcagaaataatgggagctcaaccagtgacagaagtgcagca
tctctaaaaacacacaaactcacacaaaaccaacccactcaaaagcttgagtgtaaaatg
aaagtctcaaatgacagtcattccttaaagcagaaaaaggatgctagtccaggaacatta
caccaacctgcaaaaactgcaaatgtaaaagataactctgaaaaactcagggagcaaata
atgcaatttatggaggatattgcaaggactcgatttgaattcccatcatctttgaattca
catgatcggttgttggttcaccaaatagcagaagagtttggccttgaacattttagcatt
ggtgaaagcaaagcccggtttattgttatagccaaatcagaaacgcaaagtcctgttgat
ggccaaccagtccaaatgatgctggaagtgactcggaaatctagcagtccttccccacat
atagctgaggaaaatgaacgtactgttactgaaatagaagggccacaagattgtacccct
tctgtttctcagtcaaaggtagattttaaggcactatacttggaaaggatgcagcgggaa
caagctaaacgcgagatggcaaaaccgaaacagcattctagcactactgcttcattgaag
tctaaaaataagaaacatattgaaaagggaaaagtttcaactaaggaagctgctgcaagt
aatactgacgaagattttgatgcgctcattgctgaaacaataaaggcgaatagtgtttgt
gcttttttaaaatgtaaagcaagtattctaaccttggggcaacattgcattcactgtaac
aaacactactgcctcagccatcacatcccagaggttcatggttgtggtgggagtgccaaa
gctcacgcccgaaaactcatcagcagagaaggtattctatatgcaggcagtggcactaag
gaccattcattagatccagtgaagaaagcccatctgcagagaagactaggaaagaaaata
gaacaattagctagccaacgaggcgctaaaaaggaaactacaaaaaaaaattttggtgaa
ctataa
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