Hemiscyllium ocellatum (epaulette shark): 132827640
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Entry
132827640 CDS
T09720
Symbol
skic3
Name
(RefSeq) superkiller complex protein 3
KO
K12600
superkiller protein 3
Organism
hoc
Hemiscyllium ocellatum (epaulette shark)
Pathway
hoc03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
hoc00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
132827640 (skic3)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
hoc03019
]
132827640 (skic3)
Messenger RNA biogenesis [BR:
hoc03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Ski complex
132827640 (skic3)
BRITE hierarchy
Motif
Pfam:
TPR_2
TPR_1
TPR_19
TPR_14
TPR_8
TPR_16
TPR_11
TPR_17
TPR_12
TPR_7
PPTA
ANAPC3
YceG_bac
CaM_binding
T7SS_EccA1_N
Motif
Other DBs
NCBI-GeneID:
132827640
NCBI-ProteinID:
XP_060700211
LinkDB
All DBs
Position
2:complement(56342350..56458043)
Genome browser
AA seq
1563 aa
AA seq
DB search
MSNKEVKATLKNAREAIRNKEFKEALKHCKAVLKQDKNNYNAWVFIGVAAAELEQPDQAK
TAYKKATELDPDQLLAWQGLLNLCEKNNTSDNKHELLGIYQKLMTLYESSDKQKWHEVCL
KLVDLYNQEKNYLEVAKTWSRLIQLKQQDGASKQELHQMWRKMIQLLADKVESQDNETQQ
LLITAFENVLASMDKIPSDSHQKLSTDYVKFLSKLPHEGNKLKLACETLITQYPDSSSSL
EVLAMHFIQTESFSEEALQCYSRLNITEPTNGLGLIGVGIKAMQEKKYEEAAKNLTTGLK
QAHSATIAWFYLAEIQFRMHKYEATISSCRSGLELLESSGHYGNTQQKHKLLHLQADAMI
KSGDANNIEKAFDILEQLPDSNEPTLLALKGQACLNKGLMKQASQIAADLVASCPDVAET
WELQGLVSYAQKDYIQAEQSFQKALKLKAECGKYYYYLGLTYWFMGEVMRKDKSKTATHL
LKAAKLDTYNGRTFCYLGHYYHDIVQDKNRARGCYKKAFELNNSDEEAGAAAVDLSVELG
DMETALAILRTVTDQSSAGTSKWAWLRRGLYYMRTNQSSLAVADLQAALRADLNDSNCWE
CLGEAYLSRGGYTAALKAFTKASELNPNSVYNIYKIAAIKQIIGKYAEAVTEYKQIIQNS
KKYVPALKGLGECYLMMTRSALDDCLDGRALDSAEEALQYLARAVQCRPDVSCLWKLIGD
TCTVLHVLSPAKVNIRVSAILIGQDEKRNVHYLDKNELLRLGGRCYGRALTLMSTSANLW
CDLGVNYYRQAQATAEGNIVSELLEKALLCLKKSVMLDSKNHLHWNALGVVACYKGIANY
ALAQHAFIKSVQVEQNNVMAWTNLGATYLKNENIELAHEAFKVAQSLEPSYVICWIGQAL
IAEAVGSYETMDLFRHTTELGVNTEGAKGYAHWVCSTLQDKSNRNSELYKYNIVQMNAIS
AAQVVMSKYTERIQSDATAFTMLGYLNEYLNLKEQAEVAYHRAFLLLQNTEDEEKLKYAQ
RNWMRALCAAGQYREAIETYMLNPFVEFDDIISLALVYLKKGLLQESAKAYEKALTIART
ENEKAHIMIALAMIAFKEGRIDNAKTLLFKCSMLKDPSVESLQALCALGLSKKDTTLTTA
ALNELFKHSDKINSTYETSLLSSGMFSLQANNLAVQRQAAKAVHSNPADPALWTLLSRLV
PQHTPQMAEGGIIAGNIAEILSSHQTKNALLFSAANQLAAGKGTAANEQNNALKTIQKAV
HLYPDDPAVWASLMAACHMENTLSHLENTKPKHTTLEEMFVTTITTKVEAEKTMPTPYLQ
SIENWSLQQAATGLKEEGRHSEAEAFCTKVLKRHPDHPMVFLLLRQVQCEQLLLSQQRLP
DPVLEELKKAVMSNFTSVTAWHWLAEVYKSQGLMIAAEMCYRQGLQLSSQHGNMNGKLSS
LLRLALLALSLSTIKLQNNRWASLVKEATSEAQKISLCPLAGLFQALLQFIVKMGARETR
RLLERVVYQPGYTESIASVGRWYLLRHLWAKNDDELITVLLQNGKMNGDSRIEELHKKLI
EAS
NT seq
4692 nt
NT seq
+upstream
nt +downstream
nt
atgtccaataaagaagttaaggccaccttgaaaaatgcaagggaagctataagaaataag
gaatttaaagaggcattgaaacattgcaaggctgtgttgaaacaagacaagaataactac
aatgcctgggttttcattggagttgctgcagcagagttggaacagcctgaccaggcgaag
actgcatataaaaaagccacagaacttgatccagaccagttgctggcatggcaggggttg
ctaaatctttgtgagaagaacaatacatctgacaacaagcatgagctgttgggaatttat
cagaagctaatgacgttgtatgaaagttcagacaaacagaaatggcatgaagtctgctta
aaattagttgatctctacaatcaagaaaagaattatctggaggtcgccaaaacttggagt
cgcttgatacagctaaaacaacaagatggagctagtaaacaagagctccatcagatgtgg
aggaagatgatccagttacttgcagataaagtagagagtcaggataatgaaacccaacag
ctgttgataacagcttttgaaaatgtccttgcttccatggacaagattccaagtgatagc
catcagaagctttccacggattatgttaaatttctatcaaaactgccacatgaaggaaat
aagctaaaactagcatgtgaaactttgataacccagtatcctgattcttcttcttcactc
gaagtacttgccatgcattttatccagacagagagctttagtgaagaagctttgcaatgt
tattcaagacttaatataactgaaccaacaaatgggctaggtcttattggagttggaatc
aaagctatgcaagaaaagaaatatgaagaagctgcaaagaacttaactacaggattaaag
caggcacattcagcaacaatagcatggttttacctagcagagatccagttccggatgcac
aaatatgaagcaacaattagctcctgcagaagtggtttggagctgttggaaagcagtggt
cattatgggaatacacagcaaaaacacaagttgcttcatttacaagcagatgcaatgatc
aaatctggtgatgcaaataatatagagaaagcctttgatatcttggaacagcttcctgac
tccaatgaaccaacactacttgccttgaaaggacaagcttgtttgaacaagggtctgatg
aagcaagcatctcagattgcagcagatcttgtagcttcttgtcctgatgtggcagaaaca
tgggaactccagggccttgttagttatgcccaaaaagactatattcaagcagaacaaagt
ttccagaaagctctgaaattgaaagcagagtgtggaaaatattactactaccttggacta
acttactggttcatgggggaggtgatgagaaaagacaagtctaaaactgctacacatttg
ttaaaggctgccaagttggacacatacaatggacgaacattctgctacttaggccactac
tatcatgacatagtacaagataaaaacagagctcgtggttgctacaaaaaagcctttgag
ctaaataatagtgatgaagaagcaggagcagctgctgttgacctcagtgttgaacttgga
gatatggagactgctcttgcaattctgaggacagtgactgatcagtcaagtgctggaaca
tccaaatgggcttggcttagacgaggactttattacatgagaaccaaccagagttcactg
gctgtggcagatttacaagcagccttgagagcagacctgaacgattcaaattgctgggaa
tgtttaggagaagcttatctcagtagaggaggttacactgctgccttaaaggctttcact
aaagccagtgaactgaatccaaactctgtatacaacatttacaagattgcagccattaaa
cagattattggcaaatatgcagaagcagttacagagtataaacagataattcagaattca
aagaagtatgtccctgccctcaaaggcctaggtgaatgctatttaatgatgacacgaagt
gcccttgatgattgtttagatggaagggctttggattcagcagaagaagcacttcagtac
ttagcgagagctgtacagtgtcgacctgatgtatcctgcctatggaagctaattggagat
acgtgcactgtgctccacgttttgtcaccagcaaaagttaacattagagtctctgccatt
ctcattggacaggatgaaaagagaaatgtgcattatttagataaaaatgaactgctccga
ctaggaggaagatgctatggacgggcccttacattgatgtcgacatctgccaatctgtgg
tgtgaccttggtgtgaactactaccgacaggctcaggctactgcagaagggaatatagtg
tctgagttattggaaaaagcactactgtgcctcaaaaaatctgtgatgttagacagcaaa
aatcatctacactggaatgcacttggagttgttgcatgttataaaggtattgcaaattat
gccctagcccaacatgcattcatcaaatctgttcaggttgaacaaaataatgtaatggcc
tggaccaacctgggggcaacttatttgaagaatgaaaatattgagcttgctcatgaagcc
tttaaggtagcccagtctttggaaccctcgtatgttatatgctggattggacaggcacta
attgctgaagctgttggcagctatgagaccatggatttgtttagacataccacagagctt
ggtgttaatactgagggagctaaaggttatgcacactgggtgtgttcaacactgcaggat
aaatcaaacagaaattctgaattgtacaagtacaacattgtacaaatgaatgcaatatct
gctgcgcaagttgtcatgagcaaatatacagagagaattcagagtgatgcaacagctttc
acaatgttgggttatttaaatgagtatctaaacctcaaagaacaagcagaagtggcatat
cacagagcatttttgctgctccagaatactgaagatgaagaaaagcttaagtatgcacag
aggaattggatgcgagctttatgtgctgcaggtcagtaccgggaggccattgagacttac
atgttgaacccttttgtggagtttgatgacataattagtcttgctctggtttacttgaag
aaagggcttcttcaggagagtgccaaagcttatgaaaaggctttaactattgcccgtacg
gagaacgagaaggcacacataatgattgcacttgcaatgattgctttcaaagagggtagg
atagataatgccaagactttactcttcaaatgttccatgctgaaggatcccagtgtagaa
agtctgcaggctttatgtgctctgggtctgtcgaagaaggataccaccctcactacagca
gcacttaatgaactgttcaaacattcagataaaatcaactcaacctatgaaaccagcctt
ctttcttcagggatgttttctttgcaagcaaacaatttagctgtgcagagacaagcagct
aaagctgtccacagcaatccagctgatcctgccctttggacattattatccagacttgtt
ccacaacatactccccagatggcagaaggtggaataattgctggcaatattgcagagatt
ttaagttcccatcagacaaagaatgcacttttgttcagtgctgcaaatcagttggcagct
ggtaaaggtacagcagccaatgaacaaaataatgcattaaaaactattcaaaaggcagtc
catctgtatccagatgatcctgctgtttgggccagtttaatggcagcctgtcacatggaa
aatacattatcacatttagaaaatacaaaaccaaaacatactacattagaagagatgttt
gtcacaacaatcaccaccaaagttgaagcagagaagaccatgccaactccttatcttcaa
tccatagagaactggtctctgcaacaagctgcaactggattaaaagaagagggcaggcac
tctgaagctgaagccttttgcactaaagttctgaagaggcacccagaccatcccatggtg
ttcctgttgctgagacaggttcaatgtgaacagctgttactttcacagcaacgacttcca
gatccagttttagaagaactgaaaaaggcagtgatgtcaaacttcacctcggtgacagct
tggcattggctggcagaagtatataaatctcagggtttaatgatcgcagcggaaatgtgt
tacaggcaaggactgcaactatcttcacagcacggcaatatgaatggcaaactgtcaagt
ctactcagattagcattgcttgccctctctctcagtacgattaaacttcagaacaatcga
tgggcatcattagtcaaagaagcaaccagtgaagctcaaaagatctctctttgtcctctt
gctggtctattccaagcactcctgcaatttatagttaaaatgggagcaagggaaacacga
cggctgctggagagagtggtatatcagccaggttacacagagagcattgcatcagttggc
cgttggtacctcttacgacatctgtgggctaaaaatgacgatgaacttatcacagtatta
cttcaaaatggcaaaatgaatggagattctagaattgaagagctgcacaagaagcttatt
gaagcatcctaa
DBGET
integrated database retrieval system
