Hemiscyllium ocellatum (epaulette shark): 132829155
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Entry
132829155 CDS
T09720
Symbol
upf1
Name
(RefSeq) regulator of nonsense transcripts 1 isoform X1
KO
K14326
regulator of nonsense transcripts 1 [EC:
5.6.2.5
5.6.2.3
]
Organism
hoc
Hemiscyllium ocellatum (epaulette shark)
Pathway
hoc03013
Nucleocytoplasmic transport
hoc03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
hoc00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
132829155 (upf1)
03015 mRNA surveillance pathway
132829155 (upf1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
hoc03019
]
132829155 (upf1)
Enzymes [BR:
hoc01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
132829155 (upf1)
5.6.2.5 RNA 5'-3' helicase
132829155 (upf1)
Messenger RNA biogenesis [BR:
hoc03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
132829155 (upf1)
mRNA cycle factors
Common to processing body (P body) and stress granule
132829155 (upf1)
BRITE hierarchy
Motif
Pfam:
UPF1_Zn_bind
AAA_12
AAA_11
UPF1_1B_dom
AAA_30
AAA_19
ResIII
SLFN-g3_helicase
ATPase
nSTAND3
Helicase_RecD
DEAD
AAA_16
UvrD-helicase
SRP54
UvrD_C_2
AAA_22
Motif
Other DBs
NCBI-GeneID:
132829155
NCBI-ProteinID:
XP_060702472
LinkDB
All DBs
Position
28:955474..1030625
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AA seq
1103 aa
AA seq
DB search
MSVDAYGPSSQTLTFLDTEEAELLGADTQGSEFEFTDFTLPSQTQTQGQSQGPIEGQVNG
PDGVLQNGAIDDAVAKASQLLPELNFEEDEEDTYYTKDLPLHACSYCGIHDPACVVYCNT
SKKWFCNGRGNTSGSHIVNHLVRAKCKEVTLHKDGPLGETVLECYNCGCRNVFLLGFIPA
KADSVVVLLCRQPCASQSSLKDINWDSSQWQPLIQDRCFLSWLVKIPSEQEQLRARQITA
QQINKLEELWKDNPSATLEDLEKPGVDEEPQHVLLRYEDAYQYQNIFGPLVKLEADYDKK
LKESQTQDNITVRWDLGLNKKRIAYFTLPKTDSDMRLMQGDEICLRYKGDLAPLWKGIGH
VIKVPDSILYYGDEIAIELRSSVGAPVEVTHNFQVDFVWKSTSFDRMQSALKTFAVDETS
VSGYIYHKLLGHEVEDVIIKCQLPKRFTAHGLPDLNHSQVYAVKTVLQRPLSLIQGPPGT
GKTVTSATIVYHLARQGNGPVLVCAPSNIAVDQLTEKIHHTGLKVVRLCAKSREAIDSPV
SFLALHNQIRNMDSMPELQKLQQLKDETGELSSADEKRYRALKRTAERELLMNADVICCT
CVGAGDPRLAKMQFRSILIDESTQATEPECMVPVVLGAKQLILVGDHCQLGPVVMCKKAA
KAGLSQSLFERLVVLGIRPIRLQVQYRMHPALSAFPSNIFYEGSLQNGVTAADRIKKGFD
FQWPQPDKPMFFYVTQGQEEIASSGTSYLNRTEAANVEKITTKLLKAGAKPDQIGIITPY
EGQRSYLVQYMQFSGSLHTKLYQEVEIASVDAFQGREKDFIILSCVRANEHQGIGFLNDP
RRLNVALTRARYGVIIVGNPKALSKQPLWNHLLNYYKEQKVLVEGPLNNLRESLMQFSKP
RKLVNTINPGARFMTTAMYDAREAIIPGSVYDRSGQAGRPSNMYFQTHDQIGMIGASPSH
VAAMNIPIPFNLMMPPMPPPGYFGQANGPAAGRGIAKGKVGRGARQRNRGVGNQLNSQSN
LPNSQASQDVVSQPFSQGPLTQGYISMSQPSQMSQPGLSQPELSQDSYLGDEFKSQIDVA
LSQDSTYQGERAYQHGVTGLSQY
NT seq
3312 nt
NT seq
+upstream
nt +downstream
nt
atgagtgtggacgcgtacgggccgagctcacagaccctcaccttcctggacacggaggag
gccgagctgctgggggccgatacgcagggctccgagttcgagttcaccgacttcacttta
ccgtcacagacacaaacacagggccagagccaagggcccatcgaaggccaggtgaatgga
ccagatggagttctccagaatggagcaattgatgatgctgttgccaaagcaagtcagtta
ttaccagaactgaactttgaagaggatgaagaggatacatactacacaaaggatcttcct
ttgcatgcctgcagttattgcggaattcatgatccagcctgtgttgtttactgcaacacc
agcaagaagtggttctgtaatggccgtggaaacacctctggcagccatattgtaaatcat
ctggtgagagccaagtgcaaggaagtgactcttcacaaagatgggccattgggagagact
gtcctggagtgttataattgtggttgcaggaatgtgttcctcctgggtttcatccctgct
aaggctgactctgtggtggtgctcctatgcagacagccatgtgccagtcagagcagcctg
aaagatatcaactgggatagttcacagtggcaaccactaatccaggaccgttgctttctg
tcttggttggtaaagataccttcagagcaggaacaattgcgagcccgtcagatcactgca
cagcagatcaacaaattggaggagctctggaaggataatccttctgctaccctcgaagac
ttggagaagcctggagtggatgaagagcctcagcatgtactacttcgttacgaggatgct
tatcaataccagaacatcttcggtccactggtcaagctggaggctgactatgacaaaaag
ctaaaggaatcgcagactcaggacaatatcactgtaagatgggatctgggtctgaacaag
aaaaggattgcatacttcaccttgcctaagacggactctgacatgcgcctgatgcaaggt
gacgaaatctgtctgcgttacaagggtgacctggcacctctttggaaagggatcggccac
gtgatcaaagtcccggacagtatcctttattatggggatgagatcgctattgaattgcgc
agcagtgttggagctccagttgaagtaacccacaacttccaggtggactttgtctggaaa
tcaacttcatttgacagaatgcagagtgcattaaaaaccttcgcagtggatgagacctct
gtgtctggctacatttaccacaaattgcttggccatgaggtggaggatgtgattattaaa
tgccagctgcccaaacgcttcactgcccatggtttgcctgaccttaatcactctcaggtt
tatgctgtgaagactgttctgcagcgccccctcagtctaatccaaggacctccaggcact
gggaaaactgtcacctctgctacgatagtttatcatctggccaggcaaggcaatggtcct
gtcctggtatgtgctccgagtaacattgcagtggaccagttgactgagaagattcatcat
acaggtctgaaggtggtacgtctctgtgccaagagtcgtgaggccattgattcaccagtc
tctttcctggctctgcataatcaaatccgtaacatggatagtatgcctgaattgcaaaaa
ttgcagcagttaaaggatgagactggcgagttgtcatctgcagatgagaagcgctaccgt
gcactcaaaaggacagctgagcgggaactgctgatgaatgctgatgttatttgctgtacc
tgcgttggagctggtgacccacgcctggctaagatgcagttccgttccattctcattgat
gagagcacacaggccacagagcctgaatgtatggtccctgtagtgctgggagcaaagcag
ctgatcctggtgggtgaccattgccagcttggtccggtggttatgtgtaagaaagctgct
aaagctggtctgtctcagtcgctttttgagcgtctggttgttctcgggatccgaccaatt
cgtctgcaggttcaatacaggatgcatccagctctcagtgcctttccatccaacatcttc
tatgagggctcactgcaaaatggtgtcacagcagcggatcgcatcaagaaaggctttgac
ttccagtggccacagccagacaagccaatgttcttctatgtaacccagggccaggaggaa
attgctagctcggggacctcctacctcaataggactgaggcagccaatgtcgagaagatc
accaccaaactgctgaaggcaggtgccaagccagatcaaatcggcatcatcacaccatac
gaggggcagcgatcctacctggtgcagtacatgcagttcagtggttcccttcacaccaaa
ctctatcaggaggtagaaattgccagtgttgatgcgttccaaggccgagagaaggacttc
atcatcctatcgtgtgtccgagccaacgagcatcaaggcattggatttctcaatgatccc
cggcgattgaatgtggccctcacaagagcgagatatggtgtgattattgtgggaaatcca
aaggctttatccaaacagccactgtggaatcacctgctgaattattacaaagaacagaaa
gtgctggtggagggaccactgaataatctccgcgagagtctaatgcagttcagcaaacca
cggaaacttgtcaacaccatcaatccgggagcccggttcatgacgacagcaatgtatgat
gctcgagaagctattatcccaggctctgtatatgacaggagtggtcaggcaggtcgtcca
tccaacatgtactttcaaacccatgatcagattgggatgattggagccagccccagtcat
gttgctgcaatgaatattcccattccctttaatctgatgatgcccccaatgccgcctcct
ggatactttggacaagcaaatggaccagcagcaggtcgtggaattgcaaaaggaaaagtg
ggtcgtggggctcgccagcggaaccgtggcgtggggaaccagctgaacagccagtcaaat
ctgccaaacagccaagccagtcaggatgtggtctctcagccattctctcaagggcctctg
acccagggctacatctcaatgagccagccttcacaaatgagccagcctggcctttctcag
ccagaactctctcaggatagttacctgggcgatgagttcaagtcgcagattgacgtggcc
ttgtcgcaggattccacttaccagggcgaacgtgcatatcaacatggggtgactgggctg
tcacagtactag
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integrated database retrieval system
