Hoeflea sp. IMCC20628: IMCC20628_02615
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Entry
IMCC20628_02615 CDS
T03926
Name
(GenBank) ATP-dependent DNA ligase LigD polymerase module;ATP-dependent DNA ligase LigD phosphoesterase module
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
hoe
Hoeflea sp. IMCC20628
Pathway
hoe03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
hoe00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
IMCC20628_02615
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
hoe03400
]
IMCC20628_02615
Enzymes [BR:
hoe01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
IMCC20628_02615
DNA repair and recombination proteins [BR:
hoe03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
IMCC20628_02615
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
LigD_N
DNA_ligase_A_M
DNA_ligase_A_C
DNA_primase_S
RNA_ligase
DUF6103
Motif
Other DBs
NCBI-ProteinID:
AKI01312
UniProt:
A0A0F7PJ82
LinkDB
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Position
complement(2703536..2706040)
Genome browser
AA seq
834 aa
AA seq
DB search
MAVSAKRLADYAAKRDFSKTAEPSGDSPPKTSGRPVFVVQKHDARRLHYDFRLEWDGVLL
SWAVTKGPSADPSVKRLAVRTEDHPLDYGSFEGTIPAKQYGAGTVMLWDQGWWQPQDDFA
EGLKSGKLKFVLHGQRMQGKWTLVRMHTKEKRENWLLIKEHDSLEEDTEDGLIERYDTSI
ATGRSMVDIAAGKAAAKPKPKKPSKAKAKPGFNLATPKFRKPQLAKLSDHVPEGDDWLHE
TKFDGYRCLAALGKGGTKLYTRSGLDWTDRYAGLDEAFAELDCRSALIDGEVVSVSNGKG
SNFSALQRDLEQGRPVIFMAFDLLELDGEKLDKRPLIERKEALASLLAEQSKDTPIRYSE
HVVGHGPEVFKAIEKAGGEGIISKACDSVYAGSRSGSWLKIKTRLRQEFIVGGYSPSQAK
GRPFASLLVGSLENGVLRYRGRVGGGLGERDLDKLSSLMGTRTRQTSPFDEVPADIARAA
HWLTPDLVIEVDYAELTDQGSIRHGIFRGVREDKEASMVKLEKPDMPKEPATSEHEDGSF
LGVRISHPDRVVFADNGYTKGDVASYYAKAAERMLGFAGNRPVSLLRCPDGTDGDCFFQK
HAGQGFPDGIGSVDIEESSGKTEPYMVIEKPEGFVAAAQMGSIEFHIWGSRTDALEKPDR
LVFDLDPDEGLDFAEVKTAAKQLRKMLAEIGLDSLPMVTGGKGVHVIVPLRRIAEWETVA
FFARTIATHLAERHPDRYVATMSKAKRKGKIFIDWLRNERGATAVAPYSIRARQGAPVAI
PVTWPQLARLSSANSFEIPKALKRLDLPCPLQAMAASQSISHSVVEALEKLINR
NT seq
2505 nt
NT seq
+upstream
nt +downstream
nt
atggcggtgtctgccaaaagacttgctgactatgcagccaagcgcgacttttccaaaacc
gccgagccaagcggcgacagcccgcccaagacctccggtcggccggtctttgtcgtgcag
aaacatgacgcgcgccgactgcattatgatttccggctggaatgggacggcgtgctgctc
agctgggccgtcaccaaggggccaagcgccgatccatcggtcaaacggctggcggttcgc
accgaggaccatccgctcgattatggcagtttcgaaggcaccattccggccaagcaatat
ggcgccggcacggtgatgctgtgggatcagggctggtggcagccgcaagatgatttcgcc
gaaggcctgaagtcaggaaaactgaaattcgttctgcatggtcagagaatgcagggcaag
tggaccttggtgcgcatgcacacgaaggaaaagcgcgagaactggctgctcatcaaggaa
cacgattcgctcgaagaggacaccgaagacggcctcattgaacgctatgacaccagcatc
gcaaccgggcgcagcatggttgacatcgcggccggcaaagctgctgccaaacctaagccg
aagaaacccagcaaggcgaaggccaagcccggattcaacctggccacgccaaaattccgc
aagccgcagcttgccaagctttccgatcatgttcccgagggcgatgactggctgcacgaa
accaagttcgacggctatcgctgcctggcggcactgggaaagggcgggaccaaactctac
acccgctccgggctggactggacagaccgctatgccggactggacgaggcctttgccgag
ctcgattgccgcagtgccctgatcgacggcgaggtggtgtccgtcagcaatggcaagggc
tcgaatttctccgcgcttcagcgcgatctggagcaggggaggccggttatcttcatggcc
ttcgacctgcttgagcttgatggcgaaaaactcgacaagcgcccgctgatcgagcgcaag
gaggcactggcgtcgctgcttgcagaacaatccaaggacacaccgatccgctactcggaa
catgtggtcgggcacggtccggaagtgttcaaggcgatcgagaaagcgggcggcgagggg
atcatctccaaggcgtgtgacagcgtttatgcgggaagccgaagcggcagctggttgaag
atcaagaccaggctgcgccaggaattcattgttggcggctattcgccgtcgcaagccaag
ggccggccgtttgcatcgctgctggttggttcgctcgaaaatggagttctgcgttaccgc
ggacgtgttggcggcggcctgggtgaacgcgatctcgacaagctgtcatccctgatggga
acgcgcacgcgccagacgagcccgttcgacgaagtgcctgccgacattgcccgggccgca
cattggctcacccccgatctggtgatcgaggtcgattatgccgaactgactgatcagggc
agtatccgccacggtattttccgtggcgtccgcgaagacaaggaggcctccatggtcaag
ctcgaaaaaccggacatgccgaaagaaccggccacctcggaacatgaggacgggagtttc
ctcggagtgcggatcagccatccagaccgggtggtgtttgctgataacggttacaccaag
ggcgacgtcgcaagctattacgccaaggcagcagagcggatgctgggctttgccggcaac
cggccagtctcgctgctgcgctgcccggacggaaccgatggcgattgcttcttccagaaa
catgccggccagggctttcccgatggcatcggcagtgtcgatatcgaggaaagttcgggc
aagaccgagccctatatggtgatcgagaaaccggagggattcgttgccgcagcacagatg
ggctcgatcgagtttcacatctggggatcacgcaccgatgcgctggaaaagcccgaccgt
ctcgtcttcgatctagaccccgacgaaggactggattttgccgaggtcaagaccgctgcc
aaacagctcagaaagatgctcgccgaaatcggcctcgacagtctgccaatggtcaccggc
ggcaagggcgttcatgtgatcgtgccgttgcggcgcattgccgaatgggagacggtggcc
tttttcgcccgcaccatcgccacccatctcgcagagcgccatcccgaccgctatgtcgcg
acgatgtcgaaggccaagcgcaagggcaagatcttcatcgactggttacgcaatgagcgc
ggcgcaacggcggtcgcgccctattcaatccgcgcccgccaaggtgcaccggtggcaatc
ccagtgacatggccgcaacttgcgcggctgtcatcggcaaactcattcgaaatccccaag
gcgctcaaacgtctggatctcccctgtccactgcaagcgatggccgcaagccaatcaatc
tcgcattctgttgtcgaggctctggaaaaactgatcaatcgatag
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