Haliangium ochraceum: Hoch_6005
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Entry
Hoch_6005 CDS
T01103
Name
(GenBank) TIM-barrel protein, nifR3 family
KO
K05540
tRNA-dihydrouridine synthase B [EC:1.-.-.-]
Organism
hoh
Haliangium ochraceum
Brite
KEGG Orthology (KO) [BR:
hoh00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
hoh03016
]
Hoch_6005
Transfer RNA biogenesis [BR:
hoh03016
]
Prokaryotic type
tRNA modification factors
Dihydorouridine synthases
Hoch_6005
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
Dus
DHO_dh
BKACE
DUF1485
Motif
Other DBs
NCBI-ProteinID:
ACY18480
UniProt:
D0LJX3
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All DBs
Position
complement(8227244..8228290)
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AA seq
348 aa
AA seq
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MLGALRMRIGSLTIDTPVLLAPMAAVTDLPFRTICERFGVGLTITEFLKATALCDGDAEV
VDKLTASLDGVRFGVQIYGREVEPLVQAAQLALDIGASLIDINMGCPAKRVVAGECGAAL
MQWPELSAELVRAVVASVPDSVPVTVKHRAGWNPLNRNAPEFACAMVEAGAQMVTVHGRT
RTQGFAGSVDLEVIRRVREAVPARVPVVGNGDVVCVDDYLRMREHTGCDAVMIGRGALGN
PWLFRSLHALAHGLPDPGRPDMAERYRVFCEHVALLYALKGGPKLIHEVRKACAWYAKGL
DGADGFRQHVWKLRSPDEVLVAAAAFFGRPYGGASVPHGLHCATPNQG
NT seq
1047 nt
NT seq
+upstream
nt +downstream
nt
atgttgggcgcgttgcgcatgcgtatcggatctctaaccatcgacaccccggtgctgttg
gcgccgatggcggcggtcaccgacctgccgttccgcaccatctgcgagcgcttcggggtc
ggtctcacgatcaccgaattcctcaaggccacggccctgtgcgacggcgatgccgaggtg
gtcgacaagctcacggccagcctcgacggcgtgcgcttcggcgtgcagatctacggccgc
gaggtcgagccgctggtgcaggcggcccagctcgcgctcgacatcggcgcctcgctgatc
gacatcaacatgggctgcccggccaagcgcgtggtcgccggcgagtgcggggccgcgctg
atgcagtggccggagctgtcggccgagctggtgcgcgcggtggtcgcctcggtgccggac
tcggtgccggtcacggtcaagcaccgcgcgggctggaatccgctcaaccgcaacgcgccc
gagttcgcgtgcgccatggtcgaagccggcgcgcagatggtcaccgtgcacggccgcacg
cgcacccagggctttgccggcagcgtcgatctcgaggtcatccgccgcgtgcgcgaggcc
gtacccgcgcgcgtgcccgtggtcggcaacggcgatgtggtgtgcgtggacgactacctg
cgcatgcgcgagcacaccggctgcgacgcggtcatgatcggccgcggcgcgctcggcaac
ccgtggctgttccgcagcctgcacgcgctggcgcacggcttgcccgatcccggtcggccc
gacatggccgagcgctaccgcgtgttttgcgagcatgtcgccctgctctacgcgctcaag
ggcggccccaagctgatccacgaggtgcgcaaggcgtgcgcttggtacgccaaaggactg
gacggcgctgacggctttcgccagcatgtctggaagctgcgcagccccgacgaagtactc
gtcgccgcggcggcgttttttgggaggccctacggcggcgcctccgtgccccacgggctg
cactgcgcaaccccgaaccagggatga
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