Halothermothrix orenii: Hore_03410
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Entry
Hore_03410 CDS
T00838
Name
(GenBank) DNA polymerase LigD polymerase domain protein
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
hor
Halothermothrix orenii
Pathway
hor03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
hor00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
Hore_03410
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
hor03400
]
Hore_03410
Enzymes [BR:
hor01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
Hore_03410
DNA repair and recombination proteins [BR:
hor03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
Hore_03410
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
DNA_primase_S
Motif
Other DBs
NCBI-ProteinID:
ACL69102
UniProt:
B8D1M5
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All DBs
Position
complement(354672..355613)
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AA seq
313 aa
AA seq
DB search
MKLTIGKHDVQLTNLDKVLWPELGYTKGDLINYYINMYPYLKEYLLNRPLSMKSYPDGIN
GKSFYQKDCPDYAPHWLSTYGIFSGHRKDIINWVTINKLSDLVWVANRASIELHTWFSTT
TNLDKPDFAVFDLDPGSKSSMKDVVDIALTIKNILDEFNVRSFVKTSGKRGLHVYIPVKT
RYTYKEIRSFLQNVAEMVIKLKPEQATVEWRKNKRQGKVYIDYRQNGKSKTLPAPYSLRP
TSKATVSTPLKWSEITPDLNPDNYNIKNIETRIKQKGNIWETLLKIRQELPGLFLGLLLF
LSFSLFGGLNTFL
NT seq
942 nt
NT seq
+upstream
nt +downstream
nt
ttgaagcttaccatcggtaaacacgatgttcaattaaccaatcttgataaggtcctatgg
cctgaactgggttatactaaaggtgatttgattaattactatataaatatgtatccctat
cttaaagaatacctcttaaaccgccccctgtccatgaaaagttacccggatggaattaac
ggtaaatcattttatcagaaagactgccccgattatgccccccactggctatccacttat
ggtattttctcgggccatcgaaaggatataataaactgggttactataaacaaactatca
gaccttgtctgggttgctaaccgggcctcaatagaactacatacctggttttcaactacc
actaaccttgataaacctgattttgctgtatttgacctggatcccggatctaaatcatct
atgaaagatgtagttgatatcgccctgaccattaaaaatatcctggatgaatttaatgtc
aggtcatttgtgaaaacctctggcaagaggggacttcatgtttatattcctgttaaaaca
agatacacttataaagaaataagaagcttcctgcaaaatgtagcggaaatggtaatcaaa
ttaaaaccagaacaggctactgtagaatggagaaaaaataagaggcagggtaaggtttat
atagattaccgacagaacggtaaatccaaaacccttcctgccccttattctttaaggccc
accagtaaggccaccgtctctacccctctaaaatggtcagaaataaccccggatctcaat
ccagataattacaatattaaaaatattgaaactagaatcaaacagaagggtaacatctgg
gaaacccttttaaaaatacgccaggaactacccggtctttttcttggtcttcttcttttt
ctttccttctccctcttcggtggcctcaacacttttctttag
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