Halopseudomonas pelagia: EAO82_07810
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Entry
EAO82_07810 CDS
T07735
Symbol
ligD
Name
(GenBank) DNA ligase D
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
hpeg
Halopseudomonas pelagia
Pathway
hpeg03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
hpeg00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
EAO82_07810 (ligD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
hpeg03400
]
EAO82_07810 (ligD)
Enzymes [BR:
hpeg01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
EAO82_07810 (ligD)
DNA repair and recombination proteins [BR:
hpeg03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
EAO82_07810 (ligD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
LigD_N
DNA_ligase_A_C
DNA_ligase_A_M
DNA_primase_S
mRNA_cap_enzyme
DUF5361
DUF2967
Motif
Other DBs
NCBI-ProteinID:
QFY56273
UniProt:
A0AA91U3W0
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All DBs
Position
1629282..1631912
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AA seq
876 aa
AA seq
DB search
MARPESEYNRKRNFELTSEPAEEGKRERLKKSEGLSFVIQKHDARNLHYDFRLELNGTLK
SWAVPKGPSLDPADKRLAVHVEDHPLSYGSFEGSIPKGQYGGGDVIVWDRGIWEPEGDPV
KAYKAGKLGFRLYGEKLAGNWNLVRTRLRGSGSKEQWLLIKEQDEAAQSASSFDLIAERP
ESVITGERLQRDQQGGASTGKKDARSKTARSASKASKDQVSPAREKKTKGSRGAVGEVAT
MPEQLSPQLATLVSTPPAGDWLYEIKFDGYRILTRIREGEVRLFTRNGHDWTDRLPKQAK
AIAEMDLADSWLDGEVVVLNDEGLPDFQALQNAFDKGSSQSMMYYLFDAPFLNGRDLREA
PLEQRREALEALIEEGSSLLRFSEVLDADYQHIYQSACAMQLEGVIGKRAGSEYVSARSA
DWIKLKCRLRQEFVVVGYTPPKGSRSGFGALLLGVHDGPGSKNLLYAGRVGTGFNEALLR
QLHKQLRRLERKTSPLASTRGLARQSDIHWVSPKLVCEVEFAQWTKEQIVRQAAFIALRE
DKPAEDIIKEQPKTPDEIKSSVGRPTEKEATKRPKGDTQGKLSGVAISHPERVIDKQSGA
SKYDLAAFYDNIQDWILPQLAGRAVSLVRAPEGVEGDQFFQKHAEHLAIPDIRHLDKSLD
PGHAPLMQIDSAKALVGAVQMGCIELHTWGSLSDSIEKPDRIVLDLDPDPKLPWKAMVEA
TQLLLSVLDEIGLQAWLKTSGGKGMHVIIPVARHLDWDSLKAFSKAISEFMAQQLPERFV
SKMGPKNRIGKIFIDYLRNSRGASTVAAYSARARPGLPVSVPISRDELAGLRSAQQWTVQ
NLHERLQQLSADPWADFHHRQRIGKAMWQQLGAKAP
NT seq
2631 nt
NT seq
+upstream
nt +downstream
nt
atggccagaccggagagtgaatataaccgcaagcgcaatttcgagctcacctctgagcca
gcagaagagggaaagcgggaacgcctgaagaagtctgaaggcttgagttttgtaatacag
aagcacgacgcgcgaaatctgcattatgatttccggctagagctcaacggcaccttgaag
agctgggcggtgcctaaaggtccgagcctggatccggccgacaaacgtctggcggtgcac
gtcgaagatcacccgctcagctatggcagctttgaaggcagtattcccaaaggccagtat
ggcggtggcgatgttatcgtctgggatcgcgggatctgggagcccgaaggtgaccctgtt
aaagcctacaaggcaggcaagttgggatttcgtctgtatggcgagaagcttgccgggaat
tggaatctggtacgcacgcgactcaggggcagcggcagcaaggagcaatggctattaatc
aaggagcaggatgaggcagcacagtctgccagtagctttgatttgattgccgaacgcccc
gagagcgtcatcaccggggaacgactgcagcgtgatcagcaaggcggcgcttccacaggc
aaaaaagacgcaagatccaaaactgcacgctcagcatccaaagccagtaaagatcaggtt
tcgcccgccagagaaaaaaagaccaagggctctcgcggcgctgtcggcgaagttgccacc
atgcccgagcagctctcaccgcagctggcaacgctcgtgagtactccgcccgctggcgat
tggctttatgagatcaagtttgatggctatcggattctgacgcggattcgcgaaggcgag
gtccggctgtttacccgcaacggccatgactggacagaccgtctacccaaacaagcgaag
gctattgccgaaatggatttggcagattcctggcttgatggtgaggtagtggtactgaac
gatgaaggtctgcctgactttcaggcgctacagaacgccttcgacaagggcagttcgcag
agcatgatgtattacctattcgacgcaccttttctgaatggtcgtgatctgcgcgaggcg
ccgcttgagcagcgtcgtgaagcgctggaggcactgattgaagagggcagttcgttgttg
cgtttttcggaagtactggatgctgactaccagcacatctaccaaagtgcctgtgccatg
cagctcgagggcgtcataggcaagcgcgcgggtagcgaatatgtgtccgctcgcagtgcc
gactggatcaaactcaagtgtcggctgcgtcaggagttcgtcgtggttggctatacaccc
cccaagggcagtcgaagcggttttggggcgctgttgttgggggttcatgatggccccggc
agcaagaatctgctctacgctggccgcgtgggcaccgggtttaatgaggctttgctgagg
cagctgcacaagcaactacgcagactggaacgcaagaccagccctctcgccagcacccga
ggcttagcccgtcagagcgatatccattgggtctcgcccaagcttgtttgcgaggtggag
ttcgcgcaatggaccaaggagcagatcgtgcgccaagctgctttcatcgctctgcgagag
gacaagcccgcggaggatattatcaaggagcaaccaaagacgccggatgagatcaaatcc
tctgtcgggcgtccgacagagaaagaagcaaccaaacgacccaagggtgacacgcaggga
aagttaagcggcgtcgccattagtcacccagagcgcgtcattgacaagcagagcggggct
agcaagtatgatctggcggcgttctacgacaacatacaggactggatactgccccagctt
gccggtcgagccgtttcgctcgtgcgcgctccggaaggggtggagggcgaccagttcttt
caaaaacatgccgaacacctggccattccggatatacggcatctggataaatcgcttgat
cctggccatgcgccgctgatgcagatcgattcggcgaaggccttggtgggcgctgtacaa
atgggttgtatcgaattgcatacctggggttcgttgagtgacagtatcgagaagccggac
cgtatcgtgctggacctggatccggatcccaaattgccgtggaaagcaatggttgaagcc
acccagttgctactctcggtgctggatgaaatcggcttgcaagcctggctcaagaccagc
ggcggtaagggcatgcatgtgattatcccagtcgcgcggcatttggattgggacagcctc
aaggcgttttccaaagccatttccgagttcatggcgcagcagttgccagagcgattcgtc
agcaagatggggccgaaaaatcgtatcggcaagatctttatcgactatttgcgtaatagc
cgtggcgccagcaccgtggcggcctattccgcgagggctcgccccggcctgccggtatcg
gtgccgatcagccgtgatgagctggccggtttgcgcagcgcgcaacaatggacggtgcaa
aatttgcacgagcggttgcagcagttatccgcggacccatgggccgattttcatcatcgc
cagcgtataggtaaagccatgtggcaacagctgggggccaaggcgccttga
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