KEGG   Halopseudomonas pelagia: EAO82_07810
Entry
EAO82_07810       CDS       T07735                                 
Symbol
ligD
Name
(GenBank) DNA ligase D
  KO
K01971  bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
Organism
hpeg  Halopseudomonas pelagia
Pathway
hpeg03450  Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:hpeg00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03450 Non-homologous end-joining
    EAO82_07810 (ligD)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:hpeg03400]
    EAO82_07810 (ligD)
Enzymes [BR:hpeg01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     EAO82_07810 (ligD)
DNA repair and recombination proteins [BR:hpeg03400]
 Prokaryotic type
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    Two-component NHEJ DNA repair complex
     EAO82_07810 (ligD)
SSDB
Motif
Pfam: LigD_Prim-Pol LigD_N DNA_ligase_A_C DNA_ligase_A_M DNA_primase_S mRNA_cap_enzyme DUF5361 DUF2967
Other DBs
NCBI-ProteinID: QFY56273
UniProt: A0AA91U3W0
LinkDB
Position
1629282..1631912
AA seq 876 aa
MARPESEYNRKRNFELTSEPAEEGKRERLKKSEGLSFVIQKHDARNLHYDFRLELNGTLK
SWAVPKGPSLDPADKRLAVHVEDHPLSYGSFEGSIPKGQYGGGDVIVWDRGIWEPEGDPV
KAYKAGKLGFRLYGEKLAGNWNLVRTRLRGSGSKEQWLLIKEQDEAAQSASSFDLIAERP
ESVITGERLQRDQQGGASTGKKDARSKTARSASKASKDQVSPAREKKTKGSRGAVGEVAT
MPEQLSPQLATLVSTPPAGDWLYEIKFDGYRILTRIREGEVRLFTRNGHDWTDRLPKQAK
AIAEMDLADSWLDGEVVVLNDEGLPDFQALQNAFDKGSSQSMMYYLFDAPFLNGRDLREA
PLEQRREALEALIEEGSSLLRFSEVLDADYQHIYQSACAMQLEGVIGKRAGSEYVSARSA
DWIKLKCRLRQEFVVVGYTPPKGSRSGFGALLLGVHDGPGSKNLLYAGRVGTGFNEALLR
QLHKQLRRLERKTSPLASTRGLARQSDIHWVSPKLVCEVEFAQWTKEQIVRQAAFIALRE
DKPAEDIIKEQPKTPDEIKSSVGRPTEKEATKRPKGDTQGKLSGVAISHPERVIDKQSGA
SKYDLAAFYDNIQDWILPQLAGRAVSLVRAPEGVEGDQFFQKHAEHLAIPDIRHLDKSLD
PGHAPLMQIDSAKALVGAVQMGCIELHTWGSLSDSIEKPDRIVLDLDPDPKLPWKAMVEA
TQLLLSVLDEIGLQAWLKTSGGKGMHVIIPVARHLDWDSLKAFSKAISEFMAQQLPERFV
SKMGPKNRIGKIFIDYLRNSRGASTVAAYSARARPGLPVSVPISRDELAGLRSAQQWTVQ
NLHERLQQLSADPWADFHHRQRIGKAMWQQLGAKAP
NT seq 2631 nt   +upstreamnt  +downstreamnt
atggccagaccggagagtgaatataaccgcaagcgcaatttcgagctcacctctgagcca
gcagaagagggaaagcgggaacgcctgaagaagtctgaaggcttgagttttgtaatacag
aagcacgacgcgcgaaatctgcattatgatttccggctagagctcaacggcaccttgaag
agctgggcggtgcctaaaggtccgagcctggatccggccgacaaacgtctggcggtgcac
gtcgaagatcacccgctcagctatggcagctttgaaggcagtattcccaaaggccagtat
ggcggtggcgatgttatcgtctgggatcgcgggatctgggagcccgaaggtgaccctgtt
aaagcctacaaggcaggcaagttgggatttcgtctgtatggcgagaagcttgccgggaat
tggaatctggtacgcacgcgactcaggggcagcggcagcaaggagcaatggctattaatc
aaggagcaggatgaggcagcacagtctgccagtagctttgatttgattgccgaacgcccc
gagagcgtcatcaccggggaacgactgcagcgtgatcagcaaggcggcgcttccacaggc
aaaaaagacgcaagatccaaaactgcacgctcagcatccaaagccagtaaagatcaggtt
tcgcccgccagagaaaaaaagaccaagggctctcgcggcgctgtcggcgaagttgccacc
atgcccgagcagctctcaccgcagctggcaacgctcgtgagtactccgcccgctggcgat
tggctttatgagatcaagtttgatggctatcggattctgacgcggattcgcgaaggcgag
gtccggctgtttacccgcaacggccatgactggacagaccgtctacccaaacaagcgaag
gctattgccgaaatggatttggcagattcctggcttgatggtgaggtagtggtactgaac
gatgaaggtctgcctgactttcaggcgctacagaacgccttcgacaagggcagttcgcag
agcatgatgtattacctattcgacgcaccttttctgaatggtcgtgatctgcgcgaggcg
ccgcttgagcagcgtcgtgaagcgctggaggcactgattgaagagggcagttcgttgttg
cgtttttcggaagtactggatgctgactaccagcacatctaccaaagtgcctgtgccatg
cagctcgagggcgtcataggcaagcgcgcgggtagcgaatatgtgtccgctcgcagtgcc
gactggatcaaactcaagtgtcggctgcgtcaggagttcgtcgtggttggctatacaccc
cccaagggcagtcgaagcggttttggggcgctgttgttgggggttcatgatggccccggc
agcaagaatctgctctacgctggccgcgtgggcaccgggtttaatgaggctttgctgagg
cagctgcacaagcaactacgcagactggaacgcaagaccagccctctcgccagcacccga
ggcttagcccgtcagagcgatatccattgggtctcgcccaagcttgtttgcgaggtggag
ttcgcgcaatggaccaaggagcagatcgtgcgccaagctgctttcatcgctctgcgagag
gacaagcccgcggaggatattatcaaggagcaaccaaagacgccggatgagatcaaatcc
tctgtcgggcgtccgacagagaaagaagcaaccaaacgacccaagggtgacacgcaggga
aagttaagcggcgtcgccattagtcacccagagcgcgtcattgacaagcagagcggggct
agcaagtatgatctggcggcgttctacgacaacatacaggactggatactgccccagctt
gccggtcgagccgtttcgctcgtgcgcgctccggaaggggtggagggcgaccagttcttt
caaaaacatgccgaacacctggccattccggatatacggcatctggataaatcgcttgat
cctggccatgcgccgctgatgcagatcgattcggcgaaggccttggtgggcgctgtacaa
atgggttgtatcgaattgcatacctggggttcgttgagtgacagtatcgagaagccggac
cgtatcgtgctggacctggatccggatcccaaattgccgtggaaagcaatggttgaagcc
acccagttgctactctcggtgctggatgaaatcggcttgcaagcctggctcaagaccagc
ggcggtaagggcatgcatgtgattatcccagtcgcgcggcatttggattgggacagcctc
aaggcgttttccaaagccatttccgagttcatggcgcagcagttgccagagcgattcgtc
agcaagatggggccgaaaaatcgtatcggcaagatctttatcgactatttgcgtaatagc
cgtggcgccagcaccgtggcggcctattccgcgagggctcgccccggcctgccggtatcg
gtgccgatcagccgtgatgagctggccggtttgcgcagcgcgcaacaatggacggtgcaa
aatttgcacgagcggttgcagcagttatccgcggacccatgggccgattttcatcatcgc
cagcgtataggtaaagccatgtggcaacagctgggggccaaggcgccttga

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