Halopseudomonas pelagia: EAO82_14115
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Entry
EAO82_14115 CDS
T07735
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
hpeg
Halopseudomonas pelagia
Pathway
hpeg03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
hpeg00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
EAO82_14115
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
hpeg03400
]
EAO82_14115
Enzymes [BR:
hpeg01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
EAO82_14115
DNA repair and recombination proteins [BR:
hpeg03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
EAO82_14115
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
DEAD
UvrB_inter
MFD_D3
Helicase_C
CarD_TRCF_RID
ResIII
UB2H
AroM
RecG_dom3_C
Motif
Other DBs
NCBI-ProteinID:
QFY57402
UniProt:
A0AA91U0V7
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All DBs
Position
3005816..3009301
Genome browser
AA seq
1161 aa
AA seq
DB search
MPANTRLLSVPPVARDQARSTWGNLAGAARALAIAEAAAEHAGLSLVITRDTAAADQLEQ
ELRFFAPALPVLSFPDWETLPYDRFSPHQDIISQRLKSLHLLPQVTQGILVVPMTTLLHR
IAPRSFLGGSVLMLELGQKLDIERMRLNLDAAGYRCVDTVYEHGDYAVRGALLDLFPMGS
PEPIRIDLFDDEIETLRTFDPDTQRSVDKVDSIQLLPAKEFPLDKSALTGFRARFREHFD
VDYRRCPVYQDLSEGMVPPGIEYYLPLFFDELSSLFDYLPDNTLLFSLPDIEGSAEHFWQ
DVRHRYEEQRVDKTRPLLAPASLFLSVEDCFAQIKRFPRIICHQEALPAKAGTTNFNGQA
SPELAIDNRLDQPLTALQTFIKGFEGKVLFVVESAGRREALLELLARIEIKPETVESWPE
FVAGKAAIGVIIAGIDQSMLCGHPPVALITENQLFGQRVMQRRRRGKATDLGDAVIRNLT
ELREGAPVVHIDHGVGRFLGLVNLTVEDQQAEFLTLAYADDAKLYVPVSNLHLIARYTGG
EDDSAPLHRLGSEQWQKAKRKAAEKVRDVAAELLDVYARRGARKGFSFSAPERDYQLFSE
AFPFEETADQEAAILAVIEDMVKSQPMDRLVCGDVGFGKTEVAMRAAFLAVHGGKQVAVL
VPTTLLAQQHYNSFRDRFADWPVKVEVMSRFKSTKEIKAAAEDLAEGKVDIMIGTHKLLQ
GDIQFKDLGLMIIDEEHRFGVRQKEQLKALRSEVDVLTLTATPIPRTLNMAMSGMRELSI
IATPPARRLSVRTFVMQQQAPVIKEAILRELLRGGQVYYLHNEVSSIEKCAADLAELVPE
ARIGISHGQMPERALEQVMGDFYHRRFNVLVTTTIIETGIDVPNANTIILERADKFGLAQ
LHQLRGRVGRSHHQAYAYLLTPHGKKLTSDAEKRLEAIAAAQDLGAGFTLATHDLEIRGA
GELLGEGQSGQIQAIGFTLYMDMLERAIKAIKQGKQPELDTPLGGGPDINLRLPALIPDD
YLPDVHSRLILYKRIANAADDEALKDLQVEMIDRFGLLPDAAKILFRVTALKLRCEPLGI
SKVDVGPEHGRVEFTAHTSVDPMTLVRLIQDQPNRYKLEGATLFRFNAPMGAAELRLNTV
EALIERLETPQLPTQGKGKRP
NT seq
3486 nt
NT seq
+upstream
nt +downstream
nt
atgcccgcaaatacgcgccttctttccgtgcccccggtcgcccgcgaccaggctagaagc
acctggggcaatctggccggcgccgcgcgggccctggcgattgccgaggccgccgccgaa
catgctggcctgagcctggtgattacccgcgatacggctgccgcagatcagctggagcag
gaactgcggtttttcgccccggcactgccggttctgagctttcccgactgggagacgctg
ccctacgatcgcttttcaccgcaccaggacatcatctctcagcgcctgaaaagcctgcat
ctgctgccacaggtaacccagggcattctcgtggtgcccatgaccaccctgctgcatcgg
atcgcgccacgcagctttctcggcggctcggtactgatgctggagcttggccagaagctc
gacatcgagcgcatgcgcctgaacctggatgcggccggttatcgctgcgtggacaccgtt
tacgagcacggtgactacgcggtacgcggcgcgctgctggatctgttcccgatgggcagc
ccggaaccgatccgtatcgacctgtttgatgacgaaatcgaaaccctgcgtacctttgat
ccggacacccagcgctcggtcgacaaagtcgacagcatccaactgctgccggccaaggaa
ttcccgctggataaatcggcgctgaccggtttccgcgcgcgctttcgtgaacacttcgac
gtcgactaccgccgttgcccggtctatcaggatctgagcgaaggcatggtgccccccggc
atcgaatattacctgccgctgttttttgatgagctgagcagcctgtttgattacctgccg
gacaacacgctgctgttcagcctgccggatattgagggcagcgccgagcacttctggcag
gatgtacgccaccgttacgaagaacagcgagtagacaagacgcgccccctgctcgctccc
gccagcctgtttctcagcgtcgaagattgttttgcccagatcaagcgcttcccacgcatt
atctgccatcaggaagcgctgccggccaaagcagggacaaccaatttcaatggtcaggcg
agcccggaactggccatcgacaaccggcttgatcaaccgctgaccgcgctccagaccttt
attaaaggctttgaaggcaaagtgctgttcgtagtcgaaagtgccggccgccgcgaagcg
ctgctggaactgttggcgcgtatcgagatcaagcccgagaccgttgagagctggcccgag
tttgttgccggcaaggccgccatcggagtgatcatcgccggaatcgaccagagcatgctc
tgtggtcatccgccggtagcgctgatcaccgaaaaccagttgttcggtcagcgggtgatg
caacgtcggcggcgcggtaaagcgactgatctgggcgatgcggtcatccgcaacctgacc
gaactgcgcgaaggcgcgccggtcgtgcacatcgaccacggtgtcggtcggttccttggc
ctggtcaatctgaccgtcgaagaccagcaggccgagtttcttaccctggcctacgccgac
gatgccaagctctatgtacccgtatccaacctgcatctgatcgcccgctataccggtggc
gaagacgatagcgcaccgctgcatcgcctcggctccgagcaatggcagaaagccaagcgc
aaggccgcggaaaaagtccgggacgtcgccgccgagctgctggatgtctatgcccgccgc
ggcgcacgtaagggtttcagcttcagcgccccggaacgcgactaccagctgttctccgag
gccttcccgttcgaggaaaccgccgatcaggaagcggcgatcctggccgtgatcgaagac
atggtcaaatcccagccgatggatcgtctggtctgcggtgacgttggcttcggcaagact
gaagtggccatgcgcgcggccttcctcgccgtgcacggcggcaaacaggttgcggtactg
gtgcccaccaccctgctcgcccagcagcactacaacagcttccgtgaccgttttgccgat
tggccggtcaaggttgaggtgatgtcgcgcttcaaatcgaccaaggagatcaaggccgcc
gcggaagatctggccgaaggcaaggtcgacatcatgatcggcacgcacaagctgctacag
ggtgatattcagttcaaggacctgggcctgatgatcatcgacgaggagcaccgtttcggc
gtacgccagaaggaacagctcaaggccctgcgcagcgaggtcgatgtactgaccctgacc
gcaacgcccatcccccgcacactgaacatggccatgtccggcatgcgtgaactgtcgatt
atcgccacaccgccggcgcgccgtctgtcggtgcgaactttcgtcatgcagcaacaggct
ccagtgatcaaggaagcgatcctgcgtgagctgctgcgcggcgggcaggtctactacctg
cacaacgaagtctcaagcatcgagaaatgcgctgctgatcttgccgaactggtacctgaa
gcgcgcatcggcatcagccatgggcaaatgccggaacgcgcgcttgaacaggtcatgggc
gacttctatcaccgtcgtttcaatgtactggtgactaccaccatcatcgaaaccggtatc
gatgtgcccaatgccaacaccattatcctggagcgcgccgacaaattcggtctggcccaa
ctgcaccagttgcgcggtcgcgtcggccgtagtcaccaccaggcctatgcctacctgctg
acgccgcacggcaagaagctcaccagcgatgcggaaaaacgcctggaagccatcgccgcg
gctcaggacctgggcgccggctttaccctggccacccacgacctggaaattcgcggtgcc
ggcgaactgctcggcgaaggccagagcggccagatccaggcgattggcttcacgctgtat
atggatatgcttgagcgcgcaatcaaggcgatcaaacaaggcaagcaacccgaactggat
acaccgctgggcggcggaccggacatcaacctgcgcctgccagcattgattccggacgat
tatctgccggatgttcacagcagactgattctctacaaacgcatcgccaatgctgccgat
gacgaagccttgaaagacctgcaagttgaaatgatcgaccgcttcggtctgctgcccgat
gcagccaagatcctgttccgggtgacggccttgaaactgcgctgcgaaccgttagggatc
agcaaggtggatgtagggccggagcacggccgggtggaatttaccgcacacaccagtgtg
gatccgatgacactggtcagactgatccaggatcaacccaaccgttacaagcttgaaggc
gccactctattccgattcaatgcacccatgggtgccgctgaactgcgtctgaataccgtt
gaagcactgatagaacggctggaaacaccccaattacctactcaaggcaaaggaaaacgc
ccatga
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