Helicobacter pylori P12: HPP12_1438
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Entry
HPP12_1438 CDS
T00786
Symbol
dnaE
Name
(GenBank) DNA polymerase III alpha-subunit
KO
K02337
DNA polymerase III subunit alpha [EC:
2.7.7.7
]
Organism
hpp
Helicobacter pylori P12
Pathway
hpp03030
DNA replication
hpp03430
Mismatch repair
hpp03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
hpp00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
HPP12_1438 (dnaE)
03430 Mismatch repair
HPP12_1438 (dnaE)
03440 Homologous recombination
HPP12_1438 (dnaE)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
hpp03032
]
HPP12_1438 (dnaE)
03400 DNA repair and recombination proteins [BR:
hpp03400
]
HPP12_1438 (dnaE)
Enzymes [BR:
hpp01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
HPP12_1438 (dnaE)
DNA replication proteins [BR:
hpp03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
HPP12_1438 (dnaE)
DNA repair and recombination proteins [BR:
hpp03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
HPP12_1438 (dnaE)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_alpha
DNA_pol3_finger
PHP
HHH_6
tRNA_anti-codon
Motif
Other DBs
NCBI-ProteinID:
ACJ08586
UniProt:
B6JNV8
LinkDB
All DBs
Position
complement(1512245..1515880)
Genome browser
AA seq
1211 aa
AA seq
DB search
MKENKAFTHLHLHTEYSLLDGANKIKILAKRIKELGMKSVSVTDHGNMFGAIDFYTSMKK
EGIKPIIGMEAYIHNDDNLSSKETKQRFHLCLFAKNQEGYENLMFLSSMAYLEGFYYFPR
INKKLLKEHSKGIIASSACLQGEVNYHLNTNNERNRKYGAKGYDEAKRIACEYQEIFEDD
FYLEIMRHGILDQRFIDEQVIKMSLETGLKIIATNDTHYTMPNDAKAQEVAMCVAMGKTL
NDKGRLKHSVHEFYIKSPEEMAKLFADIPEALENTQEIADKCVLEIDLKDDKKNPPTPPS
FKFTKAYAKNEGLSFEDDASYFAHKAREGLKERLILVPKEKHEQYKERLEKEIEVITNMK
FPGYMLIVWDFIRYAKEMGIPVGPGRGSAAGSLVAFALKITDIDPLKYDLLFERFLNPER
VGMPDIDTDFCQRRRKEIIEYMIEKYGKYNVAQVITFNKMLAKGVIRDVARVLDMPYKEA
DDFAKLIPNRLGITLKGYEKNGEFIEGAWELEPKIKELVESNDTARQVWEYSLNLENLNR
NAGVHAAALVVDSQKELWYKTPLFASEKTGGIVTQYSMKYLEPVDLIKFDFLGLKTLTVI
DDALKIIKTQHNIDVDFLSLDMNDPKVYKTIQSGDTVGIFQIESGMFQGLNKRLRPSSFE
DIIAIIALGRPGPMESGMVDDFVNRKHGVEPIAYAFKELEPILKPTYGTIVYQEQVMQIV
QTIGGFSLGEADLIRRAMGKKDAQIMADNKAKFVEGAKNLGHDGQKAANLWDLIVKFAGY
GFNKSHSAAYAMITFQTAYLKTYYKHEFMAAMLTSESNKIESVACYIDEVRALEIEVMPP
HINSSMQDFSVAEFKNQKGELEKKIVFGLGAVKGVGGEPIKNIIEERAKGDYKSLEDFIS
RVDFSKLTKKSLEPLVKSGSLDNLGYTRKTMLANLDLICDAGRAKDKANEMMQGGNSLFG
AMEGGVKEQVILDMIDLGEHDAKTLLECEYETLGIHVSGNPLDEFKEEIKGFKNLVKSID
IEELEIGSQAYLLGKIMEVKKKIGKRSGKPYGTADILDRYGKFELMLFEKQLNALEELDI
NKPLVFKCKIEEQEEVARLRLFEILDLESAREVKIPKARYKDPDKQKEDVREIPPMEILA
SSSCSLAIVLENDVKKEFLRQIKESALKHQGKRPLYLIIKDRDKQFKIQSDLMVNEKIKD
DFKELEWRDLA
NT seq
3636 nt
NT seq
+upstream
nt +downstream
nt
atgaaagagaataaagccttcacgcatttgcacttgcacacggaatattcgcttttagac
ggggcaaacaagattaaaatcctagccaaacgcattaaagaattgggcatgaaaagcgtg
agcgtaactgatcatgggaacatgtttggagcgattgatttttatacgagcatgaaaaaa
gaaggcattaagcctatcatcggcatggaagcgtatatccataatgatgacaacctttct
agcaaagaaaccaagcagcgtttccatttgtgcctgttcgctaaaaaccaagagggctat
gaaaatttgatgttcttaagctctatggcgtatttagaggggttttattattttccgcgc
atcaataaaaagcttctaaaagagcattctaaaggcattatcgcttctagcgcgtgcttg
caaggggaagtcaattaccatttaaatactaataatgagagaaaccgcaagtatggagct
aaaggctatgatgaagctaaaagaatcgcttgcgaataccaagagatttttgaagacgat
ttttatttagaaatcatgcgccatggcattttggatcagcgattcattgatgagcaagtc
attaaaatgtctttagaaacagggttaaaaatcattgccaccaacgacacccactacacc
atgcctaatgacgccaaagctcaagaagtggcgatgtgtgtagcgatgggtaaaacccta
aacgataaggggcgcttgaaacactccgtgcatgagttttacattaaatcccccgaagaa
atggcaaagctctttgcagatattccagaagctttagaaaacacccaagaaatcgctgat
aaatgcgttttagagattgatttaaaagacgataaaaagaaccccccaacccctccaagt
ttcaaattcactaaagcttacgccaaaaatgaggggctgagttttgaagatgacgcttct
tatttcgcccataaggccagagagggcttgaaagagcgcttaatcttagtgccaaaagaa
aagcatgaacaatacaaagagcggctagaaaaagaaattgaagtcattacgaacatgaaa
ttcccagggtatatgctgattgtgtgggattttatccgttacgctaaagaaatgggcatt
cctgtggggcctggtagggggagcgcggccgggagcttggtggcttttgctttaaaaatc
accgatattgaccctttgaaatacgatttgctctttgaaaggtttttgaaccctgaaaga
gtcggcatgcctgatattgatacggatttttgccagcgccggcgtaaggaaatcatagaa
tacatgattgaaaaatacggcaaatacaatgtggctcaagtcatcacctttaataagatg
ttggctaaaggcgtgatcagagatgtcgcaagggtgttggacatgccttataaagaagcc
gatgattttgccaaactcatccccaaccgcttaggcatcacgcttaagggctatgaaaaa
aacggcgagttcatagagggggcgtgggaattagagcctaaaatcaaggaattagtagaa
agcaatgacaccgccagacaagtgtgggagtattcgctcaacttagagaatttaaaccgc
aacgcaggcgtgcatgccgcagccttagtggtggatagccaaaaagagttgtggtacaaa
acccccttgtttgcctctgaaaaaaccggcggtatcgttacgcagtattccatgaagtat
ttggagccggtggatttgattaagtttgacttcttggggcttaaaaccttgaccgtgatt
gatgatgcgcttaaaatcattaaaacgcaacataacattgatgtggattttttatcgttg
gatatgaacgatccaaaagtgtataaaacgatccaaagcggggatacggtggggatcttc
cagattgaatccgggatgtttcaagggcttaacaagcgcttaaggccttcaagctttgaa
gacattatcgccattatcgcgctaggcagaccgggacccatggaatcaggcatggtagat
gattttgtcaatagaaagcatggcgttgagcctatcgcttatgcgtttaaagaattagag
ccgattttaaagcccacttacggcacgatcgtctatcaagagcaagtgatgcaaatcgtg
caaactatcggcggttttagtttgggtgaagcggatctcatccgccgtgctatggggaaa
aaagacgctcagatcatggcggacaataaggctaagtttgtagaaggcgctaaaaattta
gggcatgatggccaaaaagcggctaatttgtgggatttgatcgttaaatttgctggttat
ggtttcaacaaatcgcattcagccgcttatgcgatgatcactttccaaacggcgtattta
aagacttattacaagcatgagttcatggcagcgatgctcactagcgaatccaataagatc
gaatccgtggcgtgctatattgatgaggtcagggctttagaaattgaagtgatgcctccg
catatcaattcttctatgcaagatttcagcgtggcggagtttaaaaatcaaaagggcgaa
ttagaaaagaaaatcgtgtttggtttaggagcggttaaaggggttgggggtgagccgatt
aaaaacatcattgaagaaagggctaaaggggattataagagtttggaagattttatttca
cgggtggatttttctaaactcactaaaaaatctttagagccattggtgaaatcagggagc
ttggacaatttaggctacactagaaaaaccatgctcgctaacttggatttgatctgtgat
gccgggcgcgctaaagacaaggctaatgaaatgatgcaagggggcaactccctttttgga
gccatggagggcggagttaaagagcaggttattttggacatgattgatttgggcgagcat
gacgctaaaacgcttttagaatgcgagtatgagactttaggaatccatgtttcaggcaac
cctttagatgagtttaaagaagaaattaagggctttaaaaatttagtcaaaagcattgat
attgaagaattagaaatcggctcgcaagcttatttgctgggtaaaatcatggaggttaaa
aagaaaattggcaaacgaagcggtaagccttatggcacagcggacattttggatcgatac
ggcaagtttgaactcatgctttttgaaaagcaattaaacgccttagaagagttggatatt
aataagcctttagtgtttaaatgcaagattgaagagcaagaagaagtggcgcgattaagg
ctttttgaaatcttggatttagagagcgctagagaggttaaaatccctaaagcccgctat
aaagaccctgacaagcaaaaagaagatgtgcgtgaaatcccccccatggaaatactcgct
tctagttcttgctctttagcgatcgtgttagaaaacgatgtgaaaaaagagtttttaaga
caaatcaaagagagtgctttaaaacaccagggcaaacgccccttgtatttgatcatcaaa
gatagggataagcaattcaaaatccaaagcgatctaatggtaaatgaaaagattaaggac
gattttaaagaattagagtggagagatttagcttga
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integrated database retrieval system
