Helicobacter pylori Cuz20: HPCU_00405
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Entry
HPCU_00405 CDS
T01894
Name
(GenBank) RNA polymerase sigma factor RpoD
KO
K03086
RNA polymerase primary sigma factor
Organism
hpu
Helicobacter pylori Cuz20
Pathway
hpu02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
hpu00001
]
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
HPCU_00405
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
hpu03021
]
HPCU_00405
Transcription machinery [BR:
hpu03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
HPCU_00405
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_r3
Sigma70_r2
Sigma70_r4
Sigma70_r1_2
Sigma70_ner
MCR_beta_N
WYL_3
Sigma70_r4_2
ThrE
DUF1687
Motif
Other DBs
NCBI-ProteinID:
ADO03270
LinkDB
All DBs
Position
complement(79992..82010)
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AA seq
672 aa
AA seq
DB search
MKKKANEEKAPKKAKAEAAQENKTKENNKAKESKIKEAKTKESKIKETKAKEPVPVKKLS
FNEALEELFANSLSDCVSYESIIQISAKVPTLAQVKKIKELCQKYQKKLVSSSEYAKKLN
AIDKIKKTEEKKKVLDEELEDGYDFLKEKDFLEWSRSDSPVRMYLREMGDIKLLSKDEEI
ELSKQIRLGEDIILDAICSVPYLIDFIYAYKDALINRERRVKELFRSFDDDDENSVSDSK
KDDDSEEYEENEERKKVVSEKDRKRVEKVQESFKALDKAKKEWLKALEAPVDEKEDELVR
LLTLAYKRQTLKDRLYDLEPTSKLINELVKTMETTLKSGDGFEKELKRLEYKLPLFNDTL
IANHKKILANITSMTKEDIIAQVPEATMVSVYMDLKKLFLTKEASEEGFDLDPNKLKEIL
EQIKRGKLISDRAKNKMAKSNLRLVVSIAKRFTSRGLPFLDLIQEGNIGLMKAVDKFEHE
KGFKFSTYATWWIKQAISRAIADQARTIRIPIHMIDTINRINKVMRKHIQENGKEPDLEV
VAEEVGLSLDKVKNVIKVTKEPISLETPVGNDDDGKFGDFVEDKNIVSSIDHIMREDLKA
QIESVLDQLNEREKAVIRMRFGLLDDESDRTLEEIGKELNVTRERVRQIESSAIKKLRSP
QYGRILRNYLRI
NT seq
2019 nt
NT seq
+upstream
nt +downstream
nt
atgaaaaagaaagctaacgaagaaaaagccccaaaaaaagccaaagcagaagccgcacag
gaaaataaaactaaagaaaacaataaagccaaagagagcaaaattaaagaagctaaaacc
aaagagagcaaaatcaaagaaactaaagcgaaagaacctgttcctgttaaaaagcttagt
tttaatgaagcgttagaagaattgttcgccaattccttaagcgattgcgtttcttatgag
tctatcattcaaatcagtgcaaaagtccccactctagcccaagtcaaaaaaatcaaagaa
ttgtgccaaaaataccaaaagaaattagtcagctcttcagaatacgctaaaaaactcaat
gcaattgacaagattaaaaaaactgaagaaaagaaaaaagttttagatgaagaattagaa
gatggctatgactttttgaaagaaaaggattttttagagtggagcagaagcgatagccct
gtgcgcatgtatttgcgcgagatgggggatataaaacttttaagcaaagatgaagagatt
gaattgagcaagcaaatccgcttgggcgaagacattattttagacgcgatttgctcggtg
ccgtatttgattgattttatctatgcgtataaagacgctttaatcaatcgtgaaagaagg
gttaaagagctttttaggagctttgatgatgacgatgaaaatagcgtgagcgattctaaa
aaagatgacgacagcgaagaatatgaagaaaacgaagaaaggaaaaaagtcgtttctgaa
aaagacaggaagcgtgtagaaaaggttcaagaaagctttaaagccctagataaggctaaa
aaagaatggctcaaagcccttgaagcccctgtagatgaaaaagaagatgaattggtgcgt
ttattgaccctagcttacaaacgccaaacgctcaaagacagactctatgacttagagcct
accagcaaactgattaatgaattagtcaaaacgatggaaaccactttaaaaagcggcgat
gggtttgaaaaagagttgaaacgcttggaatacaagctacccttattcaatgacactctc
atcgcaaaccataaaaaaatccttgccaatatcactagcatgactaaagaggacattatc
gctcaagtgccagaagcaactatggtgagcgtgtatatggatcttaaaaagctttttttg
actaaagaagcgagcgaagaaggctttgatttagaccctaacaagctaaaagaaatttta
gagcaaatcaaaagagggaaattgatttccgatcgcgctaaaaacaaaatggctaaatcc
aatttaaggttggtggtgagcatcgctaaacgattcacgagcagaggcttgccattcttg
gatttgattcaagagggtaatattggcttgatgaaagcggtggataagtttgagcatgaa
aagggcttcaagttttctacctatgcgacctggtggatcaaacaagctatcagcagagcc
atagccgatcaagcccgcactatccgcatccccattcacatgattgataccattaatcgc
atcaataaagtcatgcgcaaacacattcaagaaaacggcaaagagcctgatttggaagtg
gtggctgaagaagtggggctttcgttagataaagtgaagaatgtgattaaggttaccaaa
gagcctatcagtttggaaaccccagtcggcaatgatgatgacggcaaatttggggatttc
gtggaagataaaaatatcgttagctccattgatcacatcatgcgagaagatttaaaagcg
caaattgaaagcgttttggatcagttgaatgagcgagaaaaagcggtgatccgcatgcgt
tttgggcttttagacgatgaaagcgatcgcactttagaagaaatcggcaaggaattgaat
gttactagagaaagggtgcgccagattgaaagctctgcgattaaaaaattgagaagcccg
caatacgggcgcattttaagaaactatttgcgcatttga
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