Helicobacter pylori Cuz20: HPCU_07945
Help
Entry
HPCU_07945 CDS
T01894
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
hpu
Helicobacter pylori Cuz20
Pathway
hpu03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
hpu00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
HPCU_07945
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
hpu03400
]
HPCU_07945
Enzymes [BR:
hpu01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
HPCU_07945
DNA repair and recombination proteins [BR:
hpu03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
HPCU_07945
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
TRCF
UvrB_inter
CarD_TRCF_RID
ResIII
Motif
Other DBs
NCBI-ProteinID:
ADO04722
LinkDB
All DBs
Position
1602074..1605073
Genome browser
AA seq
999 aa
AA seq
DB search
MIQSSLYRALNKGFDYQILACKDFKESELAKEVISYFRPNTKAILFPEFRAKKNDDLRSF
FEEFLQLLGGLREFYQALENKQEAIIIAPISALLHPLPKKELLESFKITLLEKYNLKDLK
DKLFYYGYEILDLVEVEGEASFRGDIVDIYAPNSKAYRLSFFDTECEGIKEFDPTTQMSL
KEDLLEIEIPPTLFSLNEQSYKDLKTKVEQSPLNSFSKDLTSFGLWFLGEKANDLLHAYK
SVISPKALEEIQELASLNELDNERFKFLKVLENPQGYEDLEIHAHALESFIALHSNRKIT
LLAPNKTILDNAISALEKSHMECVIAPFVLNFKTPDGIFISLNSFERKKKRQKSKLALNE
LNAGEWVVHDDYGVGVFSQLVQHSVLGSKRDFLEIAYFGEDKLLLPVENLHLIARYVAQS
DSVPIKDQLGKGSFLKLKAKVKTKLLEIASKIIELAAERDLILGKKMDTHLAELEVFKSH
AGFEYTSDQEKAIAEISKDLSSKRVMDRLLSGDVGFGKTEVAMHAIFCAFLNGFQSALVV
PTTLLAHQHFETLRARFENFGVKVARLDRYASEKNKLLKAVELGLIDVLVGTHAILGAKF
KNLGLVVVDEEHKFGVKQKEALKELSKSVHFLSMSATPIPRTLNMALSQIKGISSLKIPP
TDRKPSRTFLKEKNDELLKEIIHRELRRNGQIFYIHNHIASISKVKTKLEELIPKLKIAI
LHSQINANESEETMLEFAKGNYQVLLCTSIVESGIHLPNANTIIIDNAQNFGLADLHQLR
GRVGRGKKEGFCYFLIEDQKSLNEQALKRLLALEKNSYLGSGESIAYHDLEIRGGGNLLG
QDQSGHIKNIGYALYTRMLEDAIYELSGGKKRLEKSVEIQLSVSAFLNPELIASDSLRLD
LYRRLSLCENTDEVGQIHEEIENRFGKTDDLSAQFLQIITLKILANQLGIIKLSNFNQNI
TITYSGEKKESLKAPSKDDNDILETLLKHLRAQISLKRH
NT seq
3000 nt
NT seq
+upstream
nt +downstream
nt
atgatccaatctagcctttatagagccttaaacaaaggctttgattatcaaatactcgct
tgtaaggattttaaagagtccgagctcgctaaagaagtcataagctattttaggccaaat
accaaagccattcttttcccggagtttagggctaaaaaaaacgacgatttgcgttcgttt
tttgaagaatttttacagcttttagggggtttaagggagttttatcaagccttagaaaac
aagcaagaagcgatcattattgcccctattagcgcgttattgcaccctttgcctaaaaaa
gaacttttagaaagctttaaaatcactcttttagaaaaatataaccttaaagatttaaaa
gacaagcttttttattatggttatgaaattttagacttagtggaagtggaaggcgaagcg
agctttaggggggatattgtggatatttatgcgcccaattctaaagcgtatcgcttgagt
ttttttgacacggagtgtgagggcattaaggagtttgaccccaccactcaaatgagcctc
aaagaagatttgttagaaattgaaatcccccccacgctttttagtttaaacgaacaatct
tataaggatctgaaaaccaaagtggagcaaagcccattaaatagcttttctaaagattta
accagttttggtttgtggtttttaggggaaaaagcaaacgatttgttgcatgcctataaa
agcgttataagccctaaagctttagaagaaattcaagaattagcgagcttaaacgaattg
gataatgagcgtttcaaatttttaaaggttttagaaaacccgcaaggctatgaagattta
gaaatccatgcgcatgccctagagagctttatagctttgcattcaaatcgtaaaatcacg
ctcctagcccctaataaaacgattttagacaatgcgataagcgcgcttgaaaaaagccat
atggaatgcgtcattgccccctttgtgttaaattttaaaacccctgatgggatttttatt
tcgctcaattcctttgaaaggaagaaaaaacgccaaaaatccaagctcgctttgaatgaa
ttgaatgcgggcgaatgggtggtgcatgatgattacggggtgggcgtgttttctcaatta
gtccaacacagcgttttagggagcaagagggattttttagaaatcgcttattttggcgaa
gacaaactgctattaccggtagaaaatttgcatctaatcgctcgctatgtggcgcaaagc
gatagcgtgccaattaaagaccagctagggaaagggagtttcctcaaactgaaagctaaa
gttaaaactaagcttttagagattgcaagcaagatcattgaattagcggctgaacgcgat
ttgatcttgggtaaaaagatggacacgcatttagcggagttggaagtctttaaatcgcat
gcggggtttgaatacacaagcgatcaagaaaaagccattgctgaaatttcaaaggattta
agctctaaaagagtgatggacagattattgagtggggatgtgggttttgggaaaacagaa
gtggcgatgcatgcgattttttgcgcgtttttgaacggctttcaaagcgctctagtcgtg
cctactactttattagcgcaccagcattttgagactttaagggcacgttttgaaaatttt
ggcgttaaagtggctcgtttggacaggtatgcgagcgaaaaaaacaagcttttaaaggcg
gtggaattagggctgattgatgttcttgtaggcacgcatgcgattttgggtgcgaaattt
aaaaacttgggtttagtggtggtggatgaagagcataaatttggcgtgaaacaaaaagaa
gctttaaaagaattgagtaaaagcgtgcattttttaagcatgtccgctacgcctatcccg
cgcactttaaacatggcgctctctcaaattaaaggcattagttctttaaaaatcccgccc
acagacagaaagcccagccgcacttttttgaaagaaaagaatgacgaactcttaaaagag
attattcatagagaattacgccgtaacgggcaaattttttacatccataaccatatcgct
agcatttcaaaagtcaaaaccaagctagaagagttaatccctaaactcaaaatcgctatt
ttgcattcccaaattaacgcaaatgagagcgaagaaaccatgctagagtttgctaaggga
aactatcaggttttattatgcacttctattgtggaatcagggattcatttgcctaacgct
aacacgatcattatagataacgcgcagaattttgggctggctgatttgcaccaattgaga
gggcgtgtggggaggggtaaaaaagaaggcttttgctatttccttatagaagatcaaaaa
agtttgaatgaacaagccctaaaacgcttgctcgctttggaaaaaaattcgtatttaggc
agcggggagagtatcgcttatcatgatttagaaatcagggggggcgggaatttgctcggg
caagatcagagcgggcatattaaaaatatcggttatgcgctctatacgcgcatgcttgaa
gacgcgatttatgaattgagtggggggaaaaaaaggcttgaaaagagcgtagaaatccaa
ttgagcgtgagcgcttttttaaaccctgaactcattgcaagcgatagtttgaggttggat
ttataccgccgtttgagtttgtgtgagaatacagatgaggtggggcaaatccatgaagaa
atagaaaacaggtttggcaaaacagacgatttgagcgctcaatttttgcaaatcattacg
cttaaaattctagccaaccagcttggcatcatcaaactttctaatttcaaccaaaacatc
accatcacttatagcggtgaaaagaaagaaagcttaaaagccccaagcaaagacgataac
gatattttagaaacccttttgaaacatttgcgcgctcaaatttctttaaagcggcactaa
DBGET
integrated database retrieval system
