Helicobacter pylori v225d: HPV225_1595
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Entry
HPV225_1595 CDS
T01899
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
hpv
Helicobacter pylori v225d
Pathway
hpv03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
hpv00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
HPV225_1595 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
hpv03400
]
HPV225_1595 (mfd)
Enzymes [BR:
hpv01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
HPV225_1595 (mfd)
DNA repair and recombination proteins [BR:
hpv03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
HPV225_1595 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
TRCF
UvrB_inter
CarD_TRCF_RID
ResIII
Motif
Other DBs
NCBI-ProteinID:
ADI35611
LinkDB
All DBs
Position
1552667..1555666
Genome browser
AA seq
999 aa
AA seq
DB search
MIQSSLYRALNKGFDYQILACKDFKESELAKEVISYFKPNTKAILFPEFRAKKNDDLRSF
FEEFLQLLGGLREFYQALENKQEAIIVAPISALLHPLPKKELLESFKITLLEKYNLKDLK
DKLFYYGYEILDLVEVEGEASFRGDIVDIYAPNSKAYRLSFFDMECESIKEFDPTTQMSL
KEDLLEIEIPPTLFSLNEQSYKDLKTKVEQSPLNSFSKDLTSFGLWFLGEKANDLLHAYK
SVISPKALEEIQELASLNELDGERFKFLKVLENPQGYEDLEIHAHALESFIALHSNRKIT
LLAPNKTILDNAISTLEKSHIECVIAPFVLNFKTPDGIFISLNSFERKKKRQKSKLALNE
LNAGEWVVHDDYGVGVFSQLVQHSVLGSKRDFLEIAYLGEDKLLLPVENLHLIARYVAQS
DSVPVKDRLGKGSFLKLKAKVKTKLLEIASKIIELAAERNLILGKKMDTHLAELEVFKSH
AGFEYTSDQEKAIAEISKDLSSKRVMDRLLSGDVGFGKTEVAMHAIFCAFLNGFQSALVV
PTTLLAHQHFETLRARFENFGVKVARLDRYASEKNKLLKAVGLGLIDVLVGTHAILGAKF
KNLGLVVVDEEHKFGVKQKEALKELSKSVHFLSMSATPIPRTLNMALSQIKGISSLKIPP
TDRKPSRTFLKEKNDELLKEIIHRELRRNGQIFYIHNHIASISKVKTKLEELIPKLKIAI
LHSQINANESEEIMLEFAKGNYQVLLCTSIVESGIHLPNANTIVIDNAQNFGLADLHQLR
GRVGRGKKEGFCYFLIEDQKSLNEQALKRLLALEKNSYLGSGESIAYHDLEIRGGGNLLG
QDQSGHIKNIGYALYTRMLEDAIYELSGGKKRLEKSVEIQLSVSAFLNPELIASDSLRLD
LYRRLSFCENIDEVGQIHEEIEDRFGKTDDLSAQFLQIITLKILANQLGIIKLSNFNQNI
TITYSDGKKESLKAPSKDDNDILETLLKHLRAQISLKRH
NT seq
3000 nt
NT seq
+upstream
nt +downstream
nt
atgatccaatctagcctttatagagccttaaacaaaggctttgattatcaaatactcgct
tgtaaggattttaaagagtccgagctcgctaaagaagtcataagctattttaagccaaat
accaaagccattcttttcccggagtttagggctaaaaaaaacgacgatttgcgttcgttt
tttgaagaatttttacagcttttagggggtttaagggagttttatcaagccttagaaaac
aagcaagaagcgatcattgttgcccctattagcgcgttattgcaccctttgcctaaaaaa
gaacttttagaaagctttaaaatcactcttttagaaaaatataaccttaaggatctaaaa
gacaagctcttttattatggttatgaaattttagacttagtggaagtggaaggcgaagcg
agctttagaggggatattgtggatatttatgcgcccaattctaaggcgtatcgcttgagt
ttttttgacatggagtgtgagagcattaaggaatttgaccccaccactcaaatgagcctc
aaagaagatttgttagaaattgaaatcccccccacgctttttagtttaaacgaacaatct
tataaggatctgaaaaccaaagtagagcaaagcccattaaatagcttttctaaagattta
accagttttggtttgtggtttttaggggaaaaagcaaacgatttgctgcatgcctataaa
agcgttataagccccaaagctttagaagaaattcaagaattagcgagcttaaacgaattg
gatggtgagcgtttcaaatttttaaaggttttagaaaacccgcaaggctatgaagattta
gaaatccatgcgcatgccctagaaagctttatagctttgcattcaaatcgtaaaatcacg
ctcctagcccctaataaaacgattttagacaatgcgataagcacgcttgaaaaaagccat
attgaatgcgtcattgccccctttgtgttaaactttaaaacccctgatgggatttttatt
tcgctcaattcctttgaaaggaagaaaaaacgccaaaaatccaagctcgctttgaatgaa
ttgaatgcgggcgaatgggtggtgcatgatgattacggggtgggcgtgttttctcagtta
gtccaacacagcgttttagggagcaagagggattttttagaaatcgcttatttgggcgaa
gacaaactgctattaccggtagaaaatttgcatctaatcgctcgctatgtggcgcaaagc
gatagcgtgccagttaaagaccggctagggaaagggagttttctcaaactgaaagctaaa
gttaagactaagcttttagagattgcaagcaagatcattgaattagcggctgaacgcaat
ttgatcttgggtaaaaagatggacacgcatttagcggagttggaagtctttaaatcgcat
gcggggtttgaatacacaagcgatcaagaaaaagccatcgctgaaatttcaaaggattta
agctctaaaagagtgatggacagattgttgagtggggatgtgggttttgggaaaacagaa
gtagcgatgcatgcgattttttgcgcgtttttgaacggctttcaaagtgctctagtcgtg
cctactactttattggcgcaccagcattttgagactttaagggcgcgttttgaaaatttt
ggcgttaaagtggctcgtttggacaggtatgcgagcgaaaaaaacaagcttttaaaggcg
gtgggattagggctgattgatgttcttgtaggcacgcatgcgattttgggtgcgaaattt
aaaaacttgggtttagtggtggtggatgaagagcataaatttggcgtgaaacaaaaagaa
gctttaaaagaattgagtaaaagcgtgcattttttaagcatgtccgctacgcctatcccg
cgcactttaaacatggcactctctcaaattaaaggcattagctctttaaaaatcccgccc
acagacagaaagcccagccgcacttttttgaaagaaaagaatgatgaactcttaaaagag
attattcatagagaattacgccgtaacgggcaaattttttacatccataaccacatcgct
agcatttcaaaagtcaaaaccaagctagaagagttaatccctaaactcaaaatcgctatt
ttgcattcccaaattaacgcaaatgagagcgaagaaatcatgctagagtttgctaaggga
aactatcaggttttattatgcacttctattgtggaatcagggattcatttgcctaacgct
aacacgatcgttatagataacgcgcagaattttgggctggctgatttgcaccaattaaga
gggcgtgtggggagaggcaaaaaagaaggcttttgctattttcttatagaagatcaaaaa
agtttgaatgaacaagccctaaaacgcttgctcgctttagaaaaaaattcgtatttaggc
agcggggagagtatcgcttatcatgatttagaaatcagggggggcgggaatttgcttggg
caagatcagagcgggcatattaaaaatatcggttatgcgctctatacgcgcatgcttgaa
gatgcgatttatgaattgagtggggggaaaaaaaggcttgaaaagagcgtagagatccaa
ttgagcgtgagcgcttttttaaaccctgaactcattgcaagcgatagtttgaggttggat
ttgtaccgccgtttgagtttttgtgagaatatagatgaggtggggcaaatccatgaagaa
atagaagacaggtttggcaaaacagacgatttgagcgctcaatttttgcaaatcattacg
cttaaaattctagccaaccagcttggcatcattaaactttctaatttcaaccaaaacatc
accatcacttatagcgatggaaagaaagaaagcctaaaagccccaagcaaagacgataac
gatattttagaaacccttttgaaacatttgcgcgctcaaatttctttaaagcggcactaa
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