Helicobacter pylori oki112: HPOKI112_07975
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Entry
HPOKI112_07975 CDS
T03723
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
hpyc
Helicobacter pylori oki112
Pathway
hpyc03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
hpyc00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
HPOKI112_07975
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
hpyc03400
]
HPOKI112_07975
Enzymes [BR:
hpyc01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
HPOKI112_07975
DNA repair and recombination proteins [BR:
hpyc03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
HPOKI112_07975
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
TRCF
Helicase_C
UvrB_inter
CarD_TRCF_RID
ResIII
PAC_bac
Motif
Other DBs
NCBI-ProteinID:
AHN36924
UniProt:
X2HUK2
LinkDB
All DBs
Position
1599624..1602635
Genome browser
AA seq
1003 aa
AA seq
DB search
MIQSSLYRALNKGFDYQILACKDFKESELAKEVISYFKPNIKAILFPEFRAKKNDDLRSF
FEEFLQLLGGLREFYQALENKQEAIIIAPISALLHHLPKKELLESFKITLLEKYNLKDLK
DKLFYYGYEILDLVEVEGEASFRGDIVDIYAPNSKAYRLSFFDMECESIKEFDPTTQMSL
KEDLLEIEIPPTLFSLNEQSYKDLKTKVEQSPLNSFSKDLTSFGLWFLGEKANDLLHAYK
SVISPRALEEIQELASLNELDGERFKFLKVLENPQGYEDLEIHAHALESFIALHSNRKIT
LLAPNKTILDNAISALEKSHIECVIAPFVLNFKTPDGIFISLNSFERKKKRQKSKLALNE
LNAGEWVVHDDYGVGVFSQLVQHSVLGSKRDFLEIAYWGEDKLLLPVENLHLIARYVAQS
DSVPTKDRLGKGSFLKLKAKVKTKLLEIAGKIIELAAERNLILGKKMDTHLAELEVFKSH
AGFEYTSDQEKAIAEISKDLSSKRVMDRLLSGDVGFGKTEVAMHAIFCAFLNGFQSALVV
PTTLLAHQHFETLRARFENFGVKVARLDRYASEKNKLLKAVELGLIDVLVGTHAILGAKF
KNLGLVVVDEEHKFGVKQKEALKELSKSVHFLSMSATPIPRTLNMALSQIKGISSLKIPP
TDRKPSRTFLKEKNDELLKEIIHRELRRNGQIFYIHNHIASISKVKTKLEDLIPKLKIAI
LHSQISAHESEEIMLEFAKGNYQVLLCTSIVESGIHLPNANMIIIDNAQNFGLADLHQLR
GRVGRGKKEGFCYFLIEDQKSLNEQALKRLLALEKNSYLGSGESIAYHDLEIRGGGNLLG
QDQSGHIKNIGYALYTRMLEDAIYELSGGKKRLEKSVEIQLSVSAFLNPELIASDSLRLD
LYRRLSLCENTDEVGQIHEEIEDRFGKIDDLSAQFLQIITLKILANQLGIIKLSNFNQNI
TITYSDEKKESLKAPSKDDNDILETLLKHLHAQISLKSLRLKF
NT seq
3012 nt
NT seq
+upstream
nt +downstream
nt
atgatccaatctagcctttatagagccttaaacaaaggctttgattatcaaatactcgct
tgtaaggattttaaagagtccgagctcgctaaagaagtcataagctattttaagccaaat
atcaaagccattcttttcccggagtttagggctaaaaaaaacgacgatttgcgttcgttt
tttgaagaatttttacagcttttagggggtttaagggagttttatcaagccttagagaac
aagcaagaagcgatcattattgcccctattagcgcgttattgcaccatttgcctaaaaaa
gaacttttagaaagctttaaaatcactcttttagaaaaatataaccttaaagatttaaaa
gacaagcttttttattatggttatgaaattttagacttagtggaagtggaaggcgaagcg
agctttaggggggatattgtggatatttatgcgcccaattctaaagcgtatcgcttgagt
ttttttgacatggagtgtgagagcattaaggaatttgaccccaccactcaaatgagcctc
aaagaagatttgttagaaattgaaatcccccccacgctttttagtttgaacgaacaatct
tataaggatctgaaaaccaaagtggagcaaagccccttaaatagcttttctaaagattta
actagttttggtttgtggtttttaggagaaaaagcaaacgatttgttgcatgcctataaa
agcgttataagccctagagctttagaagaaatccaagaattagcgagcttaaacgaattg
gatggtgagcgtttcaaatttttaaaggttttagaaaacccgcaaggctatgaagattta
gaaatccatgcgcatgccctagaaagctttatagctttgcattcaaatcgtaaaatcacg
ctcctagcccctaataaaacgattttagacaatgcgataagcgcgcttgaaaaaagccat
attgaatgcgtcatcgccccctttgtgctaaactttaaaacccctgatgggatttttatt
tcgctcaattcttttgaaaggaagaaaaaacgccaaaaatccaagctcgctttgaatgaa
ttgaatgcgggcgaatgggtggtgcatgatgattatggggtgggcgtgttttctcaatta
gtccaacacagcgttttagggagcaagagggattttttagaaatcgcttattggggcgaa
gacaaactgctattaccggtagaaaacctgcacctaatcgctcgctatgtggcgcaaagc
gatagcgtgccaactaaagaccggctagggaaagggagttttctcaaactgaaagctaag
gttaagactaagcttttagagattgcaggcaagatcattgaattagcggctgaacgcaat
ttgatcttgggtaaaaagatggacacgcatttagcggagttggaagtctttaaatcgcat
gcggggtttgaatacacaagcgatcaagaaaaggctatcgctgaaatttcaaaggattta
agctctaagagagtgatggacagattactgagtggggatgtgggttttgggaaaacagaa
gtagcgatgcatgcgattttttgcgcgtttttgaacggctttcaaagcgctctggttgtg
cctactactttattagcgcaccagcattttgagactttaagggcgcgttttgaaaatttt
ggcgttaaagtggctcgtttggacaggtatgcgagcgaaaaaaacaagcttttaaaggcg
gtggaattagggctaattgatgtgcttgtaggcacgcatgcgattttaggcgcgaaattt
aaaaacttgggcttagtggtggtggatgaagagcataaatttggtgtgaaacaaaaagaa
gctttaaaagaattgagtaaaagcgtgcattttttaagcatgtccgctacgcctattccg
cgcactctaaacatggcactctctcaaattaaaggcatcagctctttaaaaatcccgccc
acagacagaaagcccagccgcacttttttgaaagaaaagaatgacgaactcttaaaagag
attattcatagagaattgcgccgtaacgggcaaattttttacatccataaccacatcgct
agcatttcaaaagtcaaaaccaagctagaagatttaatccctaaactcaaaatcgccatt
ttgcattcccaaattagcgctcatgagagcgaagaaatcatgctagagtttgctaaggga
aactatcaggttttattatgcacttccattgtggaatcagggattcatttgcctaacgct
aacatgattattatagataacgcgcaaaattttgggctggctgatttgcaccaattaaga
gggcgtgtggggaggggcaaaaaagaaggcttttgctatttcctcatagaagatcaaaaa
agtttgaatgaacaggccctaaaacgcttgctcgctttagaaaaaaattcgtatttaggc
agcggggagagtattgcttatcatgatttagaaattagggggggcgggaatttgctcggg
caagatcaaagcgggcatattaaaaatatcggttatgcactctatacgcgcatgcttgaa
gatgcgatttatgaattgagtggggggaaaaaaaggcttgaaaagagcgtagaaatccaa
ttgagcgtgagcgcttttttaaaccctgaactcattgcaagcgatagtttgagattggat
ttgtaccgccgtttgagtttgtgtgaaaatacagatgaggtggggcaaatccatgaagaa
atagaagacaggtttggcaaaatagacgatttgagcgctcaatttttgcaaatcattacg
cttaaaattctagccaaccagcttggaatcattaagctttctaatttcaatcaaaacatc
accattacttatagcgatgaaaagaaagaaagcttaaaagccccaagcaaagacgataac
gatattttagaaacccttttgaaacatttgcacgctcaaatttctttaaaatcattacgc
ttaaaattctag
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