Helicobacter pylori UM037: K750_00375
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Entry
K750_00375 CDS
T02659
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
hpyi
Helicobacter pylori UM037
Pathway
hpyi03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
hpyi00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
K750_00375
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
hpyi03400
]
K750_00375
Enzymes [BR:
hpyi01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
K750_00375
DNA repair and recombination proteins [BR:
hpyi03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
K750_00375
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
TRCF
Helicase_C
UvrB_inter
CarD_TRCF_RID
ResIII
PAC_bac
Motif
Other DBs
NCBI-ProteinID:
AGL69038
UniProt:
R4Q4M5
LinkDB
All DBs
Position
1526642..1529641
Genome browser
AA seq
999 aa
AA seq
DB search
MIQSSLYRALNKGFDYQILACKDFKESELAKEVISYFKPNIKAVLFPEFRAKKNDDLRSF
FEEFLQLLGGLREFYQALENKQEVIVIAPISALLHPLPKKELLKSFKITLLEKYNLKDLK
DKLFYYGYEILDLVEVEGEASFRGDIVDIYVPNSKAYRLSFFDTECESIKEFDPTTQMSL
KEDLLEIEIPPTLFSLDEPSYKDLKTKVEQSPLNSFSKDLTSFGLWFLGEKAQDLLSVYK
SVISPRSLEEIQELASLNELDCERFKFLKVLENAQGYEDLEIHVHTLEGFIALHSNHKIT
LLAPNKTILDNVLGTIEKSSMECVIAPFVLNFKTPDGIFISLNSFERKKKRQKSKLALNE
LNAGEWVVHDDYGVGVFSQLVQHSVLGSKRDFLEIAYLGEDKLLLPVENLHLIARYVAQS
DSVPVKDRLGKGSFLKLKAKVRAKLLEIAGKIIELAAERNLILGKKMDVHLAELEVFKSH
AGFEYTSDQEKAIAEISRDLSSHRVMDRLLSGDVGFGKTEVAMHAIFCAFLNGFQSALVV
PTTLLAHQHFETLRARFENFGVKVARLDRYASEKNKLLKAVELGQVDALIGTHAILGAKF
KNLGLMVVDEEHKFGVKQKEALKELSKSVHFLSMSATPIPRTLNMALSQIKGISSLKTPP
TDRKPSRTFLKEKNDELLKEIIHRELRRNGQIFYIHNHIASISKVKTKLENLIPKLKIAI
LHSQINANKSEEIMLEFAKGNYQVLLCTSIVESGIHLPNANTIIIDNAQNFGLADLHQLR
GRVGRGKKEGFCYFLIEDQKSLNEQALKRLLALEKNSYLGSGESIAYHDLEIRGGGNLLG
QDQSGHIKNIGYALYTRMLEDAIYELSGGKKRLEKSVEIQLGVSAFLNPELIASDSLRLD
LYRRLSLCENTDEVGQIHEEIEDRFGKIDDLSAQFLQIITLKILANQLGIVKLSNFNQNI
TLTYNDEHKESLKAPSKDDNDILETLLKHLRAQISLKRR
NT seq
3000 nt
NT seq
+upstream
nt +downstream
nt
atgatccaatctagcctttatagagccttaaacaaaggctttgattaccaaatactcgct
tgtaaggattttaaagaatccgagctcgctaaagaagtcataagctattttaagccaaat
attaaagccgttcttttcccggaatttagggctaaaaaaaacgatgatttgcgttcgttt
tttgaagaatttttacagcttttagggggtttgagggagttttatcaagccttagaaaac
aagcaagaagttatcgtcattgcccctattagcgcgttattacaccctttacccaaaaaa
gaacttttaaaaagctttaaaatcactcttttagaaaaatataaccttaaggatttgaaa
gacaagctcttttattatggctatgaaattttagacttagtggaagtggaaggcgaagcg
agttttagaggggatattgtggatatttatgtacccaattctaaagcgtatcgcttgagt
ttttttgacacggagtgtgagagcattaaggaatttgaccctaccactcaaatgagtctt
aaagaagatttgttagaaattgaaatcccccccacgctttttagtttggatgaaccatct
tataaggatctgaaaacaaaagtggaacaaagccccttaaatagcttttctaaagattta
accagttttggtttgtggtttttaggagaaaaagcgcaagacttgctaagcgtttataaa
agcgttataagccctagatctttagaagaaattcaagaattagcgagcttaaacgaattg
gattgtgagcgtttcaaatttttaaaggttttagaaaacgcacaaggctatgaagattta
gaaatccatgtgcatacattagaaggctttatcgctttgcattcaaatcataaaatcacg
ctcctagcccccaataaaacgattttagataatgtattaggcacgattgaaaaaagcagc
atggaatgcgtcatcgccccctttgtgttaaattttaaaacccctgatgggattttcatc
tcgctcaattcctttgaaaggaagaaaaaacgccaaaaatccaagctcgctttgaatgaa
ttgaatgcgggcgaatgggtggtgcatgatgattatggggtgggcgtgttttctcaatta
gtccagcacagcgttttagggagcaagagggattttttagaaatcgcttatttgggcgaa
gacaaactgctattaccggtagaaaacttgcatctcatcgctcgctatgtggcgcaaagc
gatagcgtgccggttaaagaccggctagggaaagggagctttcttaaattaaaagctaaa
gtcagggctaagcttttagagattgcgggcaagatcattgaattagcggctgaacgcaat
ttgatcttgggtaaaaagatggatgtgcatttagcggagttggaagtctttaaatcgcat
gcggggtttgaatacaccagcgatcaagaaaaagccatcgctgaaatttcaagggattta
agctctcacagggtgatggacaggttattgagtggggatgtgggttttgggaaaacggaa
gtggcgatgcatgcgattttttgcgcgtttttgaacggctttcaaagcgctttagttgtg
cctactactttattagcgcaccagcattttgagactttaagggcgcgttttgaaaatttt
ggcgttaaagtggctcgtttggacaggtatgcgagcgaaaaaaacaagcttttaaaggcg
gtggaattagggcaagttgatgcgctaataggcacgcatgcgattttaggcgcgaaattt
aaaaacttgggtttaatggtcgtagatgaagagcataaatttggcgtgaaacaaaaagaa
gctttaaaagaattgagtaagagcgtgcattttttaagcatgtccgctacgcctatcccg
cgcactttaaacatggcgctctctcaaattaaaggcattagctctttaaaaaccccgccc
acagacagaaagcccagccgcacttttttgaaagaaaagaatgacgaactcttaaaagag
atcattcatagagaattacgccgtaacgggcaaattttttacatccataaccacatcgct
agcatttcaaaagtcaaaaccaagctagaaaatttaatccctaaactcaaaatcgctatt
ttgcattcccagattaacgctaataagagcgaagaaatcatgctagagtttgctaagggg
aactatcaggttttattatgcacttctattgtggaatcagggattcatttgcctaacgct
aacacgattattatagataacgcgcaaaatttcgggctggctgatttgcaccaattgaga
gggcgtgtggggagaggcaaaaaagaaggcttttgctatttccttatagaagatcaaaaa
agtttgaatgaacaagctttaaaacgcttgctcgctttagaaaaaaattcgtatttgggt
agtggggagagtatcgcctatcatgatttggaaatcagagggggtgggaatttgctcggg
caggatcagagcgggcatattaaaaacattggttatgcgctctatacgcgcatgcttgag
gatgcgatttatgaattgagtggggggaagaaaaggcttgaaaaaagcgtagaaatccaa
cttggtgtgagcgcttttttaaaccctgaactcattgcaagcgatagtttgaggttggat
ttgtatcgccgtttgagtttgtgtgaaaatacagatgaggtggggcaaatccatgaagaa
atagaagacaggtttggcaaaatagacgatttgagtgctcaatttttgcaaatcattacg
cttaaaatcttagccaaccagcttggcatcgttaaactttctaatttcaatcaaaacatc
acccttacttataacgatgaacataaagaaagcctgaaagccccaagcaaagacgataac
gatattttagaaacccttttgaaacatttgcgtgctcaaatttctttaaagcggcgttaa
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