Helicobacter pylori oki898: HPOKI898_00735
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Entry
HPOKI898_00735 CDS
T03729
Name
(GenBank) RNA polymerase sigma factor RpoD
KO
K03086
RNA polymerase primary sigma factor
Organism
hpyj
Helicobacter pylori oki898
Pathway
hpyj02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
hpyj00001
]
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
HPOKI898_00735
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
hpyj03021
]
HPOKI898_00735
Transcription machinery [BR:
hpyj03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
HPOKI898_00735
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_r3
Sigma70_r2
Sigma70_r4
Sigma70_r1_2
Sigma70_ner
MCR_beta_N
WYL_3
Sigma70_r4_2
ThrE
Motif
Other DBs
NCBI-ProteinID:
AHN44296
LinkDB
All DBs
Position
complement(140479..142560)
Genome browser
AA seq
693 aa
AA seq
DB search
MIESMGSYFMECPMKKKANEEKAPKRAKQEAKAEATQEATQENKTKENNKAKESKIKENK
TKENKIKEAKAKEPVPVKKLSFNEALEELFANSLSDCVSYESIIQISTKVPTLAQVKKIK
ELCQKYQKKLVSSSEYAKKLNAIDKIKKTEEKQKVLDEELEDGYDFLKEKDFLEWSRSDS
PVRMYLREMGDIKLLSKDEEIELSKQIRLGEDIILDAICSVPYLIDFIYAYKDALINRER
RVKELFRSFDDDDENSVSDSKKDDDSEEDEENEERKKVVSEKDKKRVEKVQESFKALDKA
KKEWLKALEAPIDEKEDELVRSLTLAYKRQTLKDRLYDLEPTSKLINELVKTMETTLKSG
DGFEKELKRLEYKLPLFNDVLIANHKKILANITNMTKEDIIAQVPEATMVSVYIDLKKLF
LTKEASEEGFDLAPNKLKEILEQIKRGKLISDRAKNKMAKSNLRLVVSIAKRFTSRGLPF
LDLIQEGNIGLMKAVDKFEHEKGFKFSTYATWWIKQAISRAIADQARTIRIPIHMIDTIN
RINKVMRKHIQETGKEPDLEVVAEEVGLSLDKVKNVIKVTKEPISLETPVGNDDDGKFGD
FVEDKNIVSSIDHIMREDLKAQIESVLDQLNEREKAVIRMRFGLLDDESDRTLEEIGKEL
NVTRERVRQIESSAIKKLRSPQYGRILRNYLRI
NT seq
2082 nt
NT seq
+upstream
nt +downstream
nt
ttgattgaaagcatgggttcttattttatggagtgtccaatgaaaaagaaagctaacgaa
gaaaaagcccccaaaagagctaaacaggaagccaaagcagaagccacacaagaagccaca
caagaaaataaaactaaggaaaacaataaagccaaagagagcaaaattaaagaaaataaa
accaaagaaaacaaaatcaaagaagctaaagcgaaagaacccgttcctgttaaaaagctt
agttttaatgaagcgttagaagaattgttcgctaattccttaagcgattgcgtttcttat
gagtccatcattcaaatcagcacgaaagtccccactctagcccaagtcaaaaaaatcaaa
gagttgtgccaaaaataccaaaagaaattggtcagctcttcagaatacgctaaaaaactc
aatgcgattgacaagattaaaaaaactgaagaaaagcaaaaagttttagatgaagaatta
gaagatggctatgactttttgaaagaaaaggattttttagagtggagcagaagcgatagc
ccagtgcgcatgtatttgcgtgaaatgggggatataaaacttttaagcaaagatgaagag
attgaattgagcaagcaaatccgcttgggtgaagacattattttagacgcgatttgctcg
gtgccgtatttgattgattttatctatgcgtataaagacgctttaatcaatcgtgaacga
agggttaaggagcttttcaggagctttgatgatgacgatgaaaatagcgtgagcgattct
aaaaaagatgacgacagcgaagaagatgaagaaaacgaagaaaggaaaaaagtcgtttcc
gaaaaagacaagaagcgcgtagaaaaggttcaagaaagctttaaagccctagacaaggct
aaaaaagaatggcttaaagcccttgaagcccccatagatgaaaaagaagacgagttagtg
cgttcattgaccctagcttacaaacgccaaacgctcaaagacagactctatgatttagag
cctaccagcaaactgatcaatgaattagtcaaaacgatggagaccactttaaaaagcggc
gatgggtttgaaaaagagttgaaacgcttggaatataagctacccttattcaatgatgtt
ttgatcgctaaccataaaaaaattctcgctaatatcactaacatgactaaagaagatatt
atcgctcaagtgccagaagcgactatggtgagcgtgtatatagatctcaaaaaactcttt
ttgactaaagaagcgagcgaagaaggctttgatttagcccctaacaagctaaaagaaatt
ttagagcaaatcaaaagagggaaattgatttccgatcgcgctaaaaacaaaatggctaaa
tccaatttaaggttggtggtgagcatcgctaaacgattcacaagtagaggcttacccttc
ttggatttgattcaagagggtaatatcggcttgatgaaagcggtggataagtttgagcat
gaaaagggcttcaagttttctacctatgcgacctggtggatcaagcaagctatcagcaga
gccatagccgatcaagcccgcactatccgcatccccattcacatgattgacacgattaat
cgcatcaataaagtcatgcgcaaacacattcaagaaaccggcaaagagcctgatttagaa
gtggtggctgaagaagtggggctttcgttagataaagtgaagaatgtgattaaggttact
aaagagcctatcagtttggaaaccccagtcggcaatgatgatgacggcaaatttggggat
ttcgtggaagataaaaatatcgttagctccattgatcacatcatgcgagaagatttaaaa
gcccaaattgaaagcgttttggatcagttgaatgagcgagaaaaagcggtgatccgcatg
cgttttgggcttttagacgatgaaagcgatcgcactttagaagaaatcggaaaggaattg
aatgttactagagaaagggtgcgccagattgaaagctctgcgattaaaaaattgagaagc
ccgcaatacgggcgcattttaagaaactatttgcgcatttga
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