Helicobacter pylori OK310: HPOK310_1457
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Entry
HPOK310_1457 CDS
T02542
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
hpyl
Helicobacter pylori OK310
Pathway
hpyl03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
hpyl00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
HPOK310_1457 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
hpyl03400
]
HPOK310_1457 (mfd)
Enzymes [BR:
hpyl01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
HPOK310_1457 (mfd)
DNA repair and recombination proteins [BR:
hpyl03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
HPOK310_1457 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
TRCF
Helicase_C
UvrB_inter
CarD_TRCF_RID
ResIII
PAC_bac
Motif
Other DBs
NCBI-ProteinID:
BAM98885
LinkDB
All DBs
Position
1557463..1560462
Genome browser
AA seq
999 aa
AA seq
DB search
MIQSSLYRALNKGFDYQILACKDFKESELAKEVISYFKPNTKAILFPEFRAKKNDDLRSF
FEEFLQLLGGLREFYQALENKQEAIIIAPISALLHPLPKKELLESFKITLLEKYNLKDLK
DKLFYYGYEILDLVEVEGEASFRGDIVDIYAPNSKAYRLSFFDMECESIKEFDPTTQMSL
KEDLLEIEIPPTLFSLNEQSYKDLKTKVEQSPLNSFSKDLTSFGLWFLGEKANDLLHAYK
SVISPRALEEIQELASLNELDGERFKFLKVLENPQGYEDLEIHAHALESFIALHSNRKIT
LLAPNKTILDNAISALEKSHIECVIAPFVLNFKTPDGIFISLNSFERKKKRQKSKLALNE
LNAGEWVVHDDYGVGVFSQLVQHSVLGSKRDFLEIAYFGEDKLLLPVENLHLIARYVAQG
DSMPIKDRLGKGSFLKLKAKVKTKLLEIAGKIIELAAERNLILGKKMDTHLAELEVFKSH
AGFEYTSDQEKAIAEISKDLSSHKVMDRLLSGDVGFGKTEVAMHAIFCAFLNGFQSALVV
PTTLLAHQHFETLRARFENFGVKVARLDRYASEKNKLLKAVELGLIDVLVGTHAILGAKF
KNLGLVVVDEEHKFGVKQKEALKELSKSVHFLSMSATPIPRTLNMALSQIKGISSLKIPP
TDRKPSRTFLKEKNDELLKEIIHRELRRNGQIFYIHNHIASISKVKTKLEDLIPKLKIAI
LHSQINAHESEEIMLEFAKGNYQVLLCTSIVESGIHLPNANTIIIDNAQNFGLADLHQLR
GRVGRGKKEGFCYFLIEDQKSLNEQALKRLLALEKNSYLGSGESIAYHDLEIRGGGNLLG
QDQSGHIKNIGYVLYTRMLEDAIYELSGGKKRLEKSVEIQLSVSAFLNPELIGSDSLRLD
LYRRLSLCENTDEVGQIHEEIEDRFGKIDDLSAQFLQIITLKILANQLGIIKLSNFNQNI
TITYSDEKKESLKAPSKDDNDILETLLKHLHAQISLKRH
NT seq
3000 nt
NT seq
+upstream
nt +downstream
nt
atgatccaatctagcctttatagagccttaaacaaaggctttgattatcaaatactcgct
tgtaaggattttaaagagtccgagctcgctaaagaagtcataagctattttaagccaaat
accaaagccattcttttcccagagtttagggctaaaaaaaacgatgatttgcgttcgttt
tttgaagaatttttacagcttttagggggtttaagggagttttatcaagccttagagaac
aagcaagaagcgatcatcattgcccctattagcgcgttattgcaccctttgcctaaaaaa
gaacttttagaaagctttaaaatcactcttttagaaaaatataaccttaaggatttaaaa
gacaagctcttttattatggttatgaaattttagacttagtggaagtggaaggcgaagcg
agctttaggggggatattgtggatatttatgcgcctaattctaaagcgtatcgcttgagt
ttttttgacatggagtgtgagagcattaaggaatttgaccccaccactcaaatgagcctc
aaagaagatttgttagaaattgaaatcccccccacgctttttagtttaaacgaacaatct
tataaggatctcaaaaccaaagtagagcaaagccccttaaatagcttttctaaagattta
accagttttggtttgtggtttttaggggaaaaagcaaacgatttgttgcatgcctataaa
agcgttataagccctagagctttagaagaaatccaagaattagcgagcttaaacgaattg
gatggtgagcgtttcaaatttttaaaggttttagaaaacccgcaaggctatgaagattta
gaaatccatgcgcatgccctagaaagctttatagctttgcattcaaatcgtaaaatcacg
ctcctagcccctaataaaacgattttagacaatgcgataagcgcgcttgaaaaaagccat
attgaatgcgtcatcgccccctttgtgttaaactttaaaacccctgatgggatttttatt
tcgctcaattcttttgaaaggaagaaaaaacgccaaaaatccaagctcgctttgaatgaa
ttgaatgcgggcgaatgggtggtgcatgatgattatggggtgggcgtgttttctcaatta
gtccaacacagcgttttagggagcaagagggattttttagaaatcgcttattttggcgaa
gacaaactgctattaccggtagaaaatttgcatctaatcgctcgctatgtggcgcaaggc
gatagcatgccaattaaagaccggctagggaaagggagttttctcaaactgaaagctaaa
gttaaaactaaacttttagagattgcaggcaagatcattgaattagcggctgaacgcaat
ttgatcttgggtaaaaagatggacacgcatttagcggagttggaagtctttaaatcgcat
gcggggtttgaatacacaagcgatcaagaaaaagccatcgctgaaatctcaaaggattta
agctctcataaagtgatggacagattattgagtggggatgtgggttttgggaaaacagaa
gtggcgatgcatgcgattttttgcgcgtttttgaacggctttcaaagcgctctagttgtg
cctaccactttattagcgcaccagcattttgaaactttaagggcgcgttttgaaaatttt
ggcgttaaagtggctcgtttggacaggtatgcgagcgaaaaaaacaagcttttaaaggcg
gtggaattagggctaattgatgtgcttgtaggcacgcatgcgattttaggcgcgaaattt
aaaaacttgggcttagtggtggtggatgaagagcataaatttggtgtgaaacaaaaagaa
gctttaaaagaattgagcaaaagcgtgcattttttaagcatgtccgctacgcctatcccg
cgcactctaaacatggcgctctctcaaattaaaggcatcagctctttaaaaatcccgccc
acagacaggaagcccagccgcacttttttgaaagaaaagaatgacgaactcttaaaagag
attattcatagagaattgcgccgtaacgggcaaattttttacatccataaccacatcgct
agcatttcaaaagtcaaaaccaagctagaagatttaatccctaaactcaaaatcgctatt
ttgcattcccaaattaacgctcatgagagcgaagaaatcatgctagagtttgctaaggga
aactatcaggttttattatgcacttctattgtggaatcagggattcatttgcctaacgct
aacacgattattatagataacgcgcaaaattttgggctggctgatttgcaccaattaaga
gggcgtgtggggaggggcaaaaaagaaggcttttgctatttcctcatagaagatcaaaaa
agtttgaatgaacaagccctaaaacgcttgctcgctttagaaaaaaattcgtatttaggc
agcggagagagtatcgcttatcatgatttagaaatcagggggggcgggaatttgctcggg
caagatcaaagcgggcatattaaaaatatcggttatgtgctctatacgcgcatgcttgaa
gatgcgatttatgaattgagtggggggaaaaaaaggcttgaaaagagcgtagaaatccaa
ttgagcgtgagcgcttttttaaaccctgaactcattggaagcgatagtttgagattggat
ctataccgccgtttgagtttgtgtgaaaatacagatgaggtggggcaaatccatgaagaa
atagaagataggtttggcaaaatagacgatttgagcgctcaatttttgcaaatcattacg
cttaaaattctagccaaccagcttggcatcattaaactttctaatttcaatcaaaacatc
accattacttatagcgatgaaaagaaagaaagcctaaaagccccaagcaaagacgataac
gatattttagaaacccttttgaaacatttgcacgctcaaatttctttaaagcggcactaa
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