Helicobacter pylori SouthAfrica20: HPSA20_1700
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Entry
HPSA20_1700 CDS
T02807
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
hpys
Helicobacter pylori SouthAfrica20
Pathway
hpys03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
hpys00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
HPSA20_1700 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
hpys03400
]
HPSA20_1700 (mfd)
Enzymes [BR:
hpys01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
HPSA20_1700 (mfd)
DNA repair and recombination proteins [BR:
hpys03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
HPSA20_1700 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
TRCF
UvrB_inter
CarD_TRCF_RID
ResIII
Motif
Other DBs
NCBI-ProteinID:
AGT74907
UniProt:
T1UDB6
LinkDB
All DBs
Position
1583921..1586920
Genome browser
AA seq
999 aa
AA seq
DB search
MIQSILYRALNKGFDHQILACKDFKESQLAKEVISYVKPHAKAILFPEFRAKKNDDLRSF
FEEFLHLLGALREFYQALENKQEAIIIAPISALLHPLPKKELLKSFKITLLEKYDLKALK
DKLFYYGYEILDLVEVEGEASFRGDIVDIYAPNSKAYRLSFFDTECESIKEFDPITQMSL
KEELLEIEIPPTLFSLDEQSYQNLQTKVKQSPLNSFSKDLASFGLWFLDEKAQDLLSVYK
SIISPKALEEIQELASLNELDCERFKPLKILETHQGYEDLEIHARAIESFIALHSNRKIT
LLAPNKTILDNALGALERSHIQCVIAPFVLNFKTPDEIFISLNSFERKKKRQKSKLALNE
LNAGEWVVHDDYGVGVFSQLVQHSVLGSKRDFLEIAYLGEDKLLLPVENLHLIARYVAQS
DSVPTKDRLGKGSFLKLKAKVRTKLLEIASKIIELAAERNLILGKKMETHLAELEIFKTH
AGFEYTSDQEKAIAEISKDLSSHRVMDRLLSGDVGFGKTEVAMHAIFCAFLNGFQSALVV
PTTLLAHQHFETLRARFENFGVKVARLDRYVSEKNKLLKAVKSGLVDALVGTHAILGAKF
KNLGLMVVDEEHKFGVKQKEALKELSKSVHFLSMSATPIPRTLNMALSQIKGISSLKTPP
TDRKPSRTFLKEKNDELLKEIIHRELRRNGQIFYIHNHIASISKVKKELENLIPKLKIAI
LHSQINANESEEIMLEFAKGNYQVLLCTSIVESGIHLPNANTIIIDNAQNFGLADLHQLR
GRVGRGKKEGFCYFLIEDQKSLSDQALKRLLALEKNSYLGSGESIAYHDLEIRGGGNLLG
QDQSGHIKNIGYALYTRMLEDAIYELSGGKKRLEKSVEIQLSVSAFLNPELIASDSLRLD
LYRRLSLCENVDEVGQIHEEIEDRFGKMDALSEQFLQIITLKILANELGILKLSNFNQNI
TIAYSDENKESLKAPSKDDNDILETLLKHLRAQISLKRH
NT seq
3000 nt
NT seq
+upstream
nt +downstream
nt
atgatccaatctatcctttatagagccttaaataaaggttttgatcatcaaatactcgct
tgtaaggattttaaagaatctcaactcgctaaagaagtcataagctatgtgaagccacat
gccaaagccattctttttccggaatttagggctaaaaaaaatgacgatttgcgttcgttt
tttgaagaatttttacaccttttaggggctttaagggagttttatcaagccttagaaaac
aagcaagaagctatcatcattgcccctattagcgcgttattgcaccctttgcctaaaaaa
gaacttttaaaaagctttaaaatcactcttttagaaaaatacgatcttaaggcgttaaaa
gacaagctcttttattatggttatgagattttagatttggtggaagtggaaggggaggcg
agctttaggggggatattgtggatatttatgcgcccaattctaaagcgtatcgcttgagt
ttttttgacacagaatgcgagagcattaaggaatttgacccgatcactcaaatgagtctt
aaagaggaattactagaaattgaaatccctcccacgctttttagtttggacgaacaatcc
tatcaaaatttgcaaacaaaagtcaaacaaagccccttaaatagcttttctaaagattta
gccagttttggtttgtggtttttagacgaaaaagcgcaagacttgttaagcgtttataaa
agcatcataagccccaaagctttagaagaaattcaagaattagcgagcttaaacgaattg
gattgtgagcgtttcaaacctttaaaaatcttagaaacccatcaaggctatgaagattta
gaaatccatgcgcgtgcaatagaaagctttatcgctttgcattcaaatcgtaaaatcacg
ctcctagctcccaataaaacgattttagacaatgccttaggcgcgcttgaaagaagccac
attcaatgcgtcatcgccccctttgtgttgaattttaaaacccctgatgaaatttttatc
tcgctcaattcttttgaaaggaagaaaaaacgccaaaaatccaagctcgctttgaacgaa
ttgaatgcgggcgagtgggtggtgcatgatgattatggggtgggcgtgttttctcaatta
gtccagcatagcgttttagggagcaagagggattttttagagatcgcttatttgggcgaa
gacaaactgctattaccggtagaaaatctgcatctaatcgctcgttatgtggcgcaaagc
gatagcgtgccgactaaagaccggctagggaaagggagttttctcaaattaaaagctaaa
gtaagaaccaaacttttagagattgcaagcaagatcattgaattagcggctgaacgcaat
ttgatcttgggtaaaaagatggaaacgcatttagcggagttggaaatctttaaaacgcat
gcgggttttgaatacacgagcgatcaagaaaaagccatcgctgaaatttcaaaggatttg
agctctcacagggtgatggacagacttttaagcggtgatgtgggttttgggaaaacggaa
gtggcgatgcatgcgattttttgcgcgtttttaaacggctttcaaagcgcattagtcgtg
ccgactaccttactagcccaccagcattttgagactttaagggcgcgttttgaaaatttt
ggcgttaaagtggctcgtttggatcggtatgtgagcgaaaaaaacaagcttttaaaagcg
gtaaaatcagggttagttgatgcgcttgtaggcacgcatgcgattttaggcgcgaaattt
aaaaacttgggtttaatggtagtggatgaagagcataaatttggcgtgaaacaaaaagaa
gccttaaaagaattgagcaaaagcgtgcattttttaagcatgtccgctacgcctatcccg
cgcactttaaacatggcgctctctcaaattaaaggcattagctctttaaaaaccccaccc
acagacagaaagcccagccgcacttttttgaaagaaaagaatgatgaactcttaaaagag
attatccatagagaattgcgccgtaatgggcaaattttttatatccataaccatatcgct
agcatttcaaaagtcaaaaaggaattagaaaatttaatccctaaactcaaaatcgctatt
ttgcattcccaaattaacgctaacgagagcgaagagatcatgttagagtttgctaaaggg
aattatcaggttttattatgcacttctattgtggaatccggtattcatttgcctaacgct
aacacgattattattgataatgcacagaatttcgggctggctgatttgcaccaattaaga
gggcgtgtggggagaggcaaaaaagaaggcttttgctattttttgatagaagatcaaaaa
agtttgagcgatcaagctttaaaacgcttgctcgctttggaaaaaaattcgtatttgggc
agtggggagagtatcgcttatcatgatttagaaatcagggggggcgggaatttgctcggg
caagatcaaagcgggcatattaaaaatatcggctatgcactctatacgcgcatgcttgaa
gacgcgatttatgaattgagtggggggaaaaaaaggcttgaaaagagcgtagaaatccaa
ttgagcgtgagcgcttttttaaaccctgaactcatcgcaagcgatagtttgaggttggat
ctataccgccgtttgagtttgtgtgaaaatgtagatgaggtggggcaaatccatgaagaa
atagaagacaggtttggcaaaatggacgctttgagcgagcaatttttgcaaatcattacg
cttaaaattttggctaatgagcttggcatcctcaaactttctaatttcaatcaaaacatc
accatcgcttatagcgatgaaaataaagagagtttaaaagccccaagcaaagacgataac
gatattttagaaacccttttgaaacatttacgcgctcaaatttctttaaaacggcactaa
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