Helicobacter pylori 52: HPKB_1473
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Entry
HPKB_1473 CDS
T01898
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
hpz
Helicobacter pylori 52
Pathway
hpz03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
hpz00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
HPKB_1473 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
hpz03400
]
HPKB_1473 (mfd)
Enzymes [BR:
hpz01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
HPKB_1473 (mfd)
DNA repair and recombination proteins [BR:
hpz03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
HPKB_1473 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
TRCF
Helicase_C
UvrB_inter
CarD_TRCF_RID
ResIII
PAC_bac
Motif
Other DBs
NCBI-ProteinID:
ACY00009
LinkDB
All DBs
Position
1534556..1537555
Genome browser
AA seq
999 aa
AA seq
DB search
MIQSSLYGALNKGFDYQILACKDFKESELAKEVISYFKPNIKAILFPEFRAKKNDDLRSF
FEEFLQLLGGLREFYQALENKQEAIIIAPISALLHPLPKKELLESFKIILLEKYNLKDLK
DKLFYYGYEILDLVEVEGEASFRGDIVDIYAPNSKAYRLSFFDMECESIKEFDPTTQMSL
KEDLLEIEIPPTLFSLNEQSYKDLKTKVEQSPLNSFSKDLTSFGLWFLGEKANDLLHAYK
SVISPKALEEIQELASLNELDGERFKFLKVLENPQGYEDLEIHAHALESFIALHSNRKIT
LLAPNKTILDNAISALEKSHIECVIAPFVLNFKTPDGIFISLNSFERKKKRQKSKLALNE
LNPGEWVVHDDYGVGVFSQLVQHSVLGSKRDFLEIAYWGEDKLLLPVENLHLIARYVAQS
DSVPTKDRLGKGSFLKLKAKVKTKLLEIASKIIELAAERNLILGKKMDTHLAELEVFKSH
AGFEYTSDQEKAIAEISKDLSSKRVMDRLLSGDVGFGKTEVAMHAIFCAFLNGFQSALVV
PTTLLAHQHFETLRARFENFGVKVARLDRYASEKNKLLKAVGLGLIDVLVGTHAILGAKF
KNLGLVVVDEEHKFGVKQKEALKELSKSVHFLSMSATPIPRTLNMALSQIKGISSLKIPP
TDRKPSRTFLKEKNDELLKEIIHRELRRNGQIFYIHNHIASISKVKTKLEDLIPKLKIAI
LHSQISAHESEEIMLEFAKGNYQVLLCTSIVESGIHLPNANTIIIDNAQNFGLADLHQLR
GRVGRGKKEGFCYFLIEDQKSLNEQSLKRLLALEKNSYLGSGESVAYHDLEIRGGGNLLG
QDQSGHIKNIGYALYTRMLEDAIYELSGGKKRLEKSVEIQLGVSAFLNPELIASDSLRLD
LYRRLSLCENTDEVGQIHEEIEDRFGKIDDLSAQFLQIITLKILANQLGLIKLSNFNQNI
TITYSDEKKESLKAPSKDDNDILETLLKHLRAQISLKRH
NT seq
3000 nt
NT seq
+upstream
nt +downstream
nt
atgatccaatctagcctttatggagccttaaacaaaggctttgattatcaaatactcgct
tgtaaggattttaaagagtccgagctcgctaaagaagtcataagctattttaagccaaat
atcaaagccattcttttcccggagtttagggctaaaaaaaacgacgatttgcgttcgttt
tttgaagaatttttacagcttttagggggtttaagggagttttatcaagctttagaaaac
aagcaagaagcgatcattattgcccctattagcgcattattgcaccctttgcctaaaaaa
gaacttttagaaagctttaaaatcattcttttagaaaaatataaccttaaggatttaaaa
gacaagctcttttattatggttatgaaattttagacttagtggaagtggaaggcgaagcg
agctttaggggggatattgtggatatttatgcgcccaattctaaagcgtatcgcttgagt
ttttttgacatggagtgtgagagcattaaggaatttgaccctaccactcaaatgagcctc
aaagaagatttgttagaaattgaaatcccccccacgctttttagtttgaacgaacaatct
tataaggatctgaaaaccaaagtagagcaaagccccttaaatagcttttctaaagattta
accagttttggtttgtggtttttaggagaaaaagcaaacgatttgttgcatgcctataaa
agcgttataagccctaaagctttagaagaaatccaagaattagcgagcttaaacgaattg
gatggtgagcgtttcaaatttttaaaggttttagaaaacccgcaaggctatgaagattta
gaaatccatgcacatgccctagaaagctttatagctttgcattcaaatcgtaagatcacg
ctcctagcccctaataaaacgattttagacaatgcgataagcgcgcttgaaaaaagccat
attgaatgcgtcattgccccctttgtgttaaattttaaaacccctgatgggatttttatt
tcgctcaattcttttgaaaggaagaaaaaacgccaaaaatccaagcttgctttgaatgaa
ttgaatccgggcgaatgggtggtgcatgatgattacggggtgggcgtgttttctcaatta
gtccaacacagcgttttagggagcaagagggattttttagaaatcgcttattggggcgaa
gacaaactgctattaccggtagaaaacctgcacctaatcgctcgctatgtggcgcaaagc
gatagcgtgccaactaaagaccggctagggaaagggagtttcctcaaactgaaagctaaa
gttaagactaagcttttagagattgcaagcaagatcattgaattagcggctgaacgcaat
ttgatcttgggtaaaaagatggacacgcatttagcggagttggaagtctttaaatcgcat
gcggggtttgaatacacaagcgatcaagaaaaagccatcgctgaaatttcaaaggattta
agctctaagagagtgatggacagattgttgagtggggatgtgggttttgggaaaacagaa
gtggcgatgcatgcgattttttgcgcgtttttgaacggctttcaaagcgctctggttgtg
cctactactttattagcacaccagcattttgagactttaagggcgcgttttgaaaatttt
ggcgttaaagtggctcgtttggacaggtatgcgagcgaaaaaaacaagcttttaaaggcg
gtgggattagggctaattgatgtgcttgtaggcacgcatgcgattttaggcgcgaaattt
aaaaacttgggcttagtggtggtggatgaagagcataaatttggtgtgaaacaaaaagaa
gctttaaaagaattgagcaaaagcgtgcattttttaagcatgtccgctacgcctattccg
cgcactctaaacatggcactctctcaaattaaaggcattagctctttaaaaatcccgccc
acagacagaaagcccagccgcacttttttgaaagaaaagaatgacgaactcttaaaagag
attattcatagagaattgcgccgtaacgggcaaattttttacatccataaccacatcgct
agcatttcaaaagtcaaaaccaagctagaagatttaatccctaaactcaaaatcgccatt
ttgcattcccaaattagcgctcatgagagcgaagaaatcatgctagagtttgctaaggga
aactatcaggttttattgtgcacttctattgtggaatcagggattcatttgcctaacgct
aacacgattattatagataacgcgcaaaattttgggctggctgatttgcaccaattaaga
gggcgtgtggggagaggcaaaaaagaaggcttttgctattttctcatagaagatcaaaaa
agtttgaatgaacagtccctaaaacgcttgctcgctttagaaaaaaattcgtatttaggc
agcggggagagtgtcgcttatcatgatttagaaatcagggggggcgggaatttgctcggg
caagatcagagcgggcatattaaaaatatcggttatgcactctatacgcgcatgcttgaa
gacgcgatttatgaattgagtgggggaaaaaaaaggcttgaaaagagcgtagaaatccaa
cttggcgtgagcgcttttttaaaccctgaactcattgcaagcgatagtttgaggttggat
ttataccgccgtttgagtttgtgtgaaaatacagatgaggtggggcaaatccatgaagaa
atagaagatagatttggcaaaatagacgatttgagcgctcaatttttgcaaatcattacg
cttaaaattctagccaaccagcttggcctcattaaactttctaatttcaatcaaaacatc
accattacttatagcgatgaaaagaaagaaagcctaaaagccccaagcaaagacgataac
gatattttagaaacccttttgaaacatttgcgcgctcaaatttctttaaagcggcactaa
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