Herbaspirillum rubrisubalbicans: Hrubri_0313
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Entry
Hrubri_0313 CDS
T04238
Symbol
ddlB
Name
(GenBank) D-alanine-D-alanine ligase B
KO
K01921
D-alanine-D-alanine ligase [EC:
6.3.2.4
]
Organism
hrb
Herbaspirillum rubrisubalbicans
Pathway
hrb00470
D-Amino acid metabolism
hrb00550
Peptidoglycan biosynthesis
hrb01100
Metabolic pathways
hrb01502
Vancomycin resistance
Brite
KEGG Orthology (KO) [BR:
hrb00001
]
09100 Metabolism
09106 Metabolism of other amino acids
00470 D-Amino acid metabolism
Hrubri_0313 (ddlB)
09107 Glycan biosynthesis and metabolism
00550 Peptidoglycan biosynthesis
Hrubri_0313 (ddlB)
09160 Human Diseases
09175 Drug resistance: antimicrobial
01502 Vancomycin resistance
Hrubri_0313 (ddlB)
09180 Brite Hierarchies
09181 Protein families: metabolism
01011 Peptidoglycan biosynthesis and degradation proteins [BR:
hrb01011
]
Hrubri_0313 (ddlB)
Enzymes [BR:
hrb01000
]
6. Ligases
6.3 Forming carbon-nitrogen bonds
6.3.2 Acid-D-amino-acid ligases (peptide synthases)
6.3.2.4 D-alanine---D-alanine ligase
Hrubri_0313 (ddlB)
Peptidoglycan biosynthesis and degradation proteins [BR:
hrb01011
]
Precursor biosynthesis
Amino acid ligase
Hrubri_0313 (ddlB)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Dala_Dala_lig_C
Dala_Dala_lig_N
ATP-grasp_3
ATP-grasp
TTL
CPSase_L_D2
ATPgrasp_ST
Motif
Other DBs
NCBI-ProteinID:
ALU87542
UniProt:
A0A0U3K4B5
LinkDB
All DBs
Position
360387..361391
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AA seq
334 aa
AA seq
DB search
MISQDQIKAFGRVGVLFGGRSAEREVSLMSGNGVLQALRSKGVDAHPFDPAERSLGELQA
EQFDRVFIALHGRYGEDGTLQGALEQMGLPYTGPGVMASSIAMDKIMTKRIWLSHGLVTP
RFLSLDAKSTTREQLRVVPDELGLPLMLKAPHEGSTIGIAKVNGYSDMQVSFDLCARYDS
VVLAEEFIRGRELTVPVLGKGRDARALPIIEICAPGGNYDYQNKYFTDDTKYYCPAPLDE
ELTRHIQDLAVRAFNALGCRGWSRVDFMLREGDGKAEPYLIEINTSPGMTGHSLVPMAAK
AVGMSYEDLCCEILQMAALDMRPSKDWTPQVAQS
NT seq
1005 nt
NT seq
+upstream
nt +downstream
nt
atgatcagccaggaccagatcaaggcctttggccgtgtcggtgtgctcttcggtggtcgt
tccgccgagcgcgaagtatcgctgatgtcgggcaatggcgtgctgcaggccttgcgcagc
aagggcgtcgatgcccatccctttgacccggctgaacgcagcctgggtgagttgcaggcc
gagcagttcgaccgcgtcttcattgccctgcacggtcgctatggcgaggacggcacgctg
caaggcgcgctggaacagatgggattgccctacaccggcccgggcgtgatggcctcgagc
atcgccatggacaagatcatgaccaagcgcatctggctctcgcacggcctggtcacgccg
cgcttcctgagcctggatgccaagagcaccacacgtgaacaattgcgcgtggtccccgat
gagctgggcctgccgctgatgttgaaggcaccgcacgagggttcgaccatcggcattgcc
aaggtgaatggttattccgacatgcaggtcagcttcgacctgtgcgcccgctatgacagc
gtggtgctggccgaggaattcatccgtggccgcgaattgacggtgccggtgctgggcaaa
ggacgcgatgcgcgggccttgccgatcatcgagatctgcgcgccgggtggcaattacgac
taccagaacaagtatttcaccgacgacacgaaatattactgccccgccccgctggacgag
gaactgacgcgccacatccaggatctggcggtacgggccttcaatgcgctgggttgccgc
ggctggagccgggtggacttcatgctgcgcgagggggatggcaaggccgagccttacctg
atcgaaatcaatacctcgcccggcatgaccggccattcgctggtgccgatggcggccaag
gcggtgggcatgagttatgaagatctgtgctgtgaaattctgcagatggccgcgctggac
atgaggccatccaaggactggacgccgcaggtggcacagtcgtga
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