Herbaspirillum rubrisubalbicans: Hrubri_2562
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Entry
Hrubri_2562 CDS
T04238
Name
(GenBank) ATP-dependent DNA ligase protein
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
hrb
Herbaspirillum rubrisubalbicans
Pathway
hrb03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
hrb00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
Hrubri_2562
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
hrb03400
]
Hrubri_2562
Enzymes [BR:
hrb01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
Hrubri_2562
DNA repair and recombination proteins [BR:
hrb03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
Hrubri_2562
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
LigD_N
DNA_ligase_A_C
DNA_ligase_A_M
DNA_primase_S
RNA_ligase
MAGE_N
Motif
Other DBs
NCBI-ProteinID:
ALU89743
UniProt:
A0A0U3LYM1
LinkDB
All DBs
Position
complement(2975521..2978106)
Genome browser
AA seq
861 aa
AA seq
DB search
MSASSLDRYHARRDFSITPEPSGHGRQTARSAQGPLQFFIQRHHARRLHYDFRLELDGVL
KSWAVPKGPSLDPHDKRLAVRVEDHPLDYGSFEGDIPAQQYGAGHVVLWDRGQWLPHGDP
QAGLKQGHLGFTLQGDKLQGRWALVRMGKPERDGKENWLLIKEDDAAAQTGEAAAITELR
PESVKDRGDLPSAASELAHGVSQADAIEPHPARIPDVMPAQLATLVDQAPQGEDWLCELK
FDGYRGLCRIEGGQAAIYTREGLDWSHRWPVLVQALARLPVDQAWIDGEVVALDAAGHIS
FEALQNLVRGDRQQADGIRLALYVFDLPYLNGYDLRAVPLTQRKALLRELVPGSDEEGLL
LYSEHLLGHADEVLRHACQHGMEGIVVKRADAPYSGRRDRNWLKLKCEQRQEFVIAGYTD
PAGQRSGFGAILVGVYDDQGQLHYAGRVGTGFDERLLGRMLKLFQRLEQDRPAFVDPPTG
QQRRGVHWLKPELVAEVKFAQWTKSGILRHGSFVALREDKPPTSIVRETQQPVAADAPAA
EEGTAPSPPSPPSRRPSPADLSQPVMVAGVKLTHPGKILFPATGLTKLELARYYQSVAPW
ILPELKQRPLSLVRCPDGQAGKCFFQKHSGQGMPEAIDTIQVPEGEGTAQYMMVNDVAGL
VATVQMGVLELHAWGATGRALDQPDRVVFDLDPAPDVPWASVVEGAQLVRALLQEIGLES
YLKTSGGKGLHVMVPMRPEHDWDVVKDWAHRLAAHLARLLPERFIARMSKAARAGKIFID
YLRNAPGATTVVAYSVRARDGAPVSVPITWEELEQGVRADHFKVATMPQRLQSLAHSDPW
AGFGQPRQRLTKAMLAAFDPV
NT seq
2586 nt
NT seq
+upstream
nt +downstream
nt
atgagcgcttcttccctggatcgctaccacgccaggcgcgacttcagtattacgccagaa
ccttcaggtcatggtcgccaaacggcccgctcagcccaggggccgctgcaattcttcata
cagcgccaccatgcgcggcgcctgcactacgacttccggctggagcttgatggcgtgctc
aagagctgggcggttccgaaagggccgagcctggatccgcatgacaagcgcctggcggta
cgggtcgaggatcatccgctggattacggcagtttcgagggcgatattccggcgcagcag
tatggcgccggccacgtggtgctgtgggatcgcgggcaatggctgccgcatggcgaccca
caggccggtttgaagcaaggtcatctcggtttcaccctgcagggcgacaagctgcagggc
cgctgggcgctggtgcgcatgggcaagccggagcgcgatggcaaggagaattggctattg
atcaaggaggatgacgctgccgcccagaccggcgaggccgcggccattaccgaattgcgc
ccggaaagcgtgaaagatcgcggtgaccttccgtctgcggccagcgagcttgcccatgga
gtcagccaggctgatgctatagagccgcatcccgccaggataccggatgtgatgccggcg
caactggcgaccctggtcgaccaggcgccccagggtgaagactggctctgcgaactgaaa
ttcgacggttatcgcggcctgtgtcgcattgagggcggccaggctgccatctacacccgc
gaaggcctggactggagccatcgctggccggtgctggtgcaggcgctggcgcggctgccg
gtggaccaggcctggatcgatggcgaagtggtggcgctggacgccgcggggcacatcagc
tttgaagccctgcagaacctggtgcgcggcgaccgtcagcaggccgacggcatccggctg
gcgctgtatgtattcgatctgccttacctgaatggctacgacttgcgcgccgtcccgctg
acgcagcgcaaggcgctgctgcgcgagctggtccccggcagtgatgaagagggattgctg
ctctatagcgagcatctcctcggtcatgccgatgaagtattgcgccatgcttgccagcac
ggcatggagggcatcgtggtcaagcgcgccgatgcgccctatagcggccgacgcgaccgc
aactggctcaagctcaagtgcgagcagcgacaggaattcgtgatcgccggctataccgat
ccggccggccagcgcagcggtttcggcgccatcctggtgggggtctatgacgatcagggg
caattgcactacgccggccgcgtcggcaccggttttgatgagcgcctgctgggccgtatg
ctcaagctgttccagcggctggagcaggatcgtccggctttcgtcgatccccctaccggc
cagcagcggcgtggcgtgcactggctcaagccggaactggtggccgaagtgaagtttgcg
caatggaccaaaagcggtatcctgcgccacggcagcttcgtggccctgcgcgaagacaag
ccgcctaccagtatcgtgcgcgagacacagcagccggtagcagccgatgcgcctgccgca
gaggagggtacagcgccttcacccccgtcacccccgtcgcgcagacctagccccgccgat
ctctcccaaccggtcatggtggctggggtcaagctcacgcatcccggcaagatcctcttt
cccgccactgggctgaccaagctggaactggcccgttactaccagagcgtggcgccctgg
atcctgcccgaactgaagcagcgcccgttgtcgctggtgcgctgcccggacggtcaggcc
ggcaagtgcttcttccagaagcacagcggccagggaatgcctgaagccatcgataccatc
caggtgccggaaggcgaggggacggcgcagtacatgatggtcaatgacgtggccgggctg
gtggcgaccgtccagatgggcgtactggaattgcacgcctggggcgccaccggccgtgcg
ctggatcagcctgaccgcgtagtgttcgacctggacccggccccggacgtgccttgggcc
agcgtagtggagggcgcccaactggtgcgcgccctgttgcaggaaatcggcctggagagc
tatctgaagacttcgggcggcaagggcttgcacgtcatggtgccgatgcgccccgagcat
gactgggacgtggtcaaggattgggcgcaccggttggcggcccacctggcgcggctgctg
ccggagcgattcatcgcccgcatgagcaaggcggcgcgcgccggcaagatattcatcgac
tacctgcgcaatgccccgggggccaccacggtggtggcctattcggtgcgggcccgcgat
ggtgcgccggtgtcggtaccgatcacctgggaagagctggagcagggcgtgcgggccgat
catttcaaggtggccaccatgccccagcggctgcaaagcctggcccacagcgacccttgg
gccggtttcggccagccccggcagcgcctgaccaaggccatgctggcggccttcgatcca
gtctga
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