Herbaspirillum rubrisubalbicans: Hrubri_4445
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Entry
Hrubri_4445 CDS
T04238
Symbol
xylF
Name
(GenBank) ABC-type D-xylose transport system, periplasmic component protein
KO
K10543
D-xylose transport system substrate-binding protein
Organism
hrb
Herbaspirillum rubrisubalbicans
Pathway
hrb02010
ABC transporters
Brite
KEGG Orthology (KO) [BR:
hrb00001
]
09130 Environmental Information Processing
09131 Membrane transport
02010 ABC transporters
Hrubri_4445 (xylF)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
02000 Transporters [BR:
hrb02000
]
Hrubri_4445 (xylF)
Transporters [BR:
hrb02000
]
ABC transporters, prokaryotic type
Saccharide, polyol, and lipid transporters
D-Xylose transporter
Hrubri_4445 (xylF)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Peripla_BP_4
Peripla_BP_1
Peripla_BP_3
ADH_zinc_N
BRCT
CbiJ
Adhesin_P1_N
Motif
Other DBs
NCBI-ProteinID:
ALU91590
UniProt:
A0A0U3KFF8
LinkDB
All DBs
Position
5215084..5216100
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AA seq
338 aa
AA seq
DB search
MKAILKKTVLALMTVTTLSMVAGSAMADAKNPKIGFSIDDLRVERWARDRDFFTAAAEKL
GAKVYVQSADASEQRQISQIENLISRGVDVIVIVPFNATVLTNTIKEAKKAGIKVLSYDR
LILNADVDAYISFDNEKVGEMQAEGILKVKNKGNFFLLGGSPTDNNAKMFREGQMKALKP
YIDKGDIKIVGQQWVKEWNPTEALSIVENALTANNNKIDAIVASNDGTAGGAIQALAAQK
LAGKVPVSGQDADLAAVKRVVAGTQTMTVYKPLKQIATEAAKLSVQLARNEKPTYNAQYD
NGFKKVDSLLLKPILLTKDNVKVLVDDGFYTQAQIDGR
NT seq
1017 nt
NT seq
+upstream
nt +downstream
nt
atgaaggcaatcctgaagaagaccgtgctggcgctcatgaccgtgaccaccctgtccatg
gtggctggcagcgccatggccgacgccaagaaccccaagatcggtttttccatcgatgac
ctgcgcgtggagcgctgggcgcgcgaccgcgatttcttcaccgccgccgccgaaaagctg
ggcgccaaggtctacgtgcaatcggccgatgccagcgagcaacgtcagatctcgcagatc
gaaaacctgatctcgcgcggcgtggacgtgatcgtgatcgtccccttcaatgccacggtc
ctgaccaacaccatcaaggaagccaagaaggctggcatcaaggtgctgtcctatgaccgc
ctgattctgaacgccgatgtggatgcctacatctccttcgataacgagaaggtcggtgaa
atgcaggccgagggcatcctcaaggtcaagaacaagggcaacttcttcctcttgggcggc
tcgcccaccgacaacaacgccaagatgttccgcgaaggccagatgaaggccttgaagccc
tacatcgacaagggcgacatcaagatcgtcggccagcaatgggtcaaggaatggaacccg
accgaagcgctgtccatcgttgagaatgcgttgacggccaacaacaacaagatcgacgcc
atcgtcgcctccaacgatggcaccgccggtggcgccatccaggccctggccgcacagaag
ctggccggcaaggtgccggtctcgggtcaggatgccgatctggccgcagtcaagcgtgtg
gtggccggtacccagaccatgaccgtctacaagcccttgaagcagatcgccaccgaagcc
gccaagctgtccgtgcaactggcccgcaacgagaagccgacctacaacgcccagtatgac
aacggcttcaagaaggtcgacagcctgctgttgaagcccatcctgctgaccaaggacaac
gtcaaggtcctggtcgatgacggcttctacacccaggcccagatcgacggccgttga
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