Haliotis rufescens (red abalone): 124138786
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Entry
124138786 CDS
T07893
Name
(RefSeq) THO complex subunit 1-like
KO
K12878
THO complex subunit 1
Organism
hrf
Haliotis rufescens (red abalone)
Pathway
hrf03013
Nucleocytoplasmic transport
hrf03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
hrf00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
124138786
09122 Translation
03013 Nucleocytoplasmic transport
124138786
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
hrf03019
]
124138786
03041 Spliceosome [BR:
hrf03041
]
124138786
Messenger RNA biogenesis [BR:
hrf03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
TREX complex
124138786
Spliceosome [BR:
hrf03041
]
Complex C
Other components
EJC/TREX
124138786
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
124138786
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
efThoc1
Death
bDLD3
Motif
Other DBs
NCBI-GeneID:
124138786
NCBI-ProteinID:
XP_048255677
LinkDB
All DBs
Position
Unknown
AA seq
670 aa
AA seq
DB search
MCRKTNMAASMHFDFSASRKKFTEFLHHSSEEVQTTLEGIDKYSGSETEKKLALDQSLRD
ALKEALVFQKGYDVFKALIHFSVEAASKEMCSASTPFLMLSDIFDMMTLDKCEEVFNIVE
EKVTTWKSSMFYDAGKNYLLRMCNDLIRRLSKSQNTVFCGRIQLFLSRLFPLSEKSALNL
MSQFNLDNVTVYNVKSDQRKIKLKDDSKDESMDVEEGEMDDFSSSSGVPIDYNLYRRFWS
LQEYFRKPAQCYEKVAWKQFVVNADEVLAAFDSLKLDDLKSQRKNPHARKQPDTQTFFAK
YLTSEKLLDLQLSDSNFRRYVLVQFLILFQYLNLQVKFKNATQVLNDDQSNWLKNAQEKV
YQLIRETPPEGEKFAATVEHILQREENWNNWKNEGCPSYERETPKDAPKMKVRAKRRRIG
DDLKASGGKIIKMGSGELTRLWNINPDNMDACKNEKRDFLPQLDDFFGEAIEQDDPEAMI
EDNYKLIYEQSFQWKALRLLARRCPHFFTHNNTPAIPIPKYLELMVKKLATEMPSQSSED
TSGDQQEMKTEIGEEEEAIKETQDEEDLKQGNEPDKDEPAEEQLTRAQLEMVAGKLADDW
KKLGTELNFPEDDMGYFEESCDKVAKLSGLKMLTVWMESEPERATIGALQIALKEIGHVD
IATEVFGALT
NT seq
2013 nt
NT seq
+upstream
nt +downstream
nt
atgtgtagaaaaacaaatatggctgcctccatgcatttcgacttttcagcatcaagaaaa
aagtttacagagtttctccatcattcaagtgaggaggtccaaaccacacttgagggaatt
gacaaatattctggcagtgaaacagaaaagaagttggcactggatcagtccctaagagat
gcacttaaagaagctttggttttccaaaagggctatgatgttttcaaggctttgatacac
ttttctgtagaagctgcatctaaagagatgtgctctgcttccacaccattcctgatgttg
tcggacatctttgacatgatgaccttggacaagtgtgaggaggtgtttaacatcgtggag
gagaaagtgacaacatggaagtctagcatgttctatgatgctggaaaaaactatctgcta
cgaatgtgcaatgacttaattcgtcgtctcagcaagtcccagaacactgtgttctgtggt
cggattcagctgtttctgtcccgactcttcccactgtcagagaagtcggctctcaacctc
atgagtcagttcaacctggacaacgtcactgtgtacaatgtcaagtcagatcaacgcaaa
ataaagctgaaggatgacagcaaggatgaaagtatggatgttgaggaaggagaaatggat
gacttttcaagctccagtggtgttcccatagactacaacctttataggagattctggtca
ctgcaggaatatttccggaaaccggcacagtgctacgagaaagtggcatggaaacagttt
gtcgtgaatgcagacgaggtgctagcagcttttgacagtctaaagctggacgatctcaag
tcccagaggaagaacccacatgccaggaagcagccagacacacagactttttttgcaaag
tacctcaccagtgaaaagcttctggatctgcagctgagtgacagcaatttccggcgttat
gtgctggtccagttcctcatcctcttccagtacctcaacctgcaggtcaagttcaagaat
gctacccaagtcttgaatgatgatcagagcaactggttaaagaatgcccaggagaaagtg
tatcagctgatcagagagacaccgcctgagggggagaagtttgctgccacagttgagcac
attctgcagagggaggagaactggaacaactggaagaacgagggctgccccagctatgag
agggagacaccaaaggatgcgcccaaaatgaaagtcagagcgaagcgccggcgtattggg
gatgatctgaaagctagtggagggaagattatcaagatgggcagtggagagctgactcga
ctatggaacatcaaccctgataacatggatgcttgcaagaatgaaaagagagactttcta
cctcagcttgatgacttctttggagaagccattgagcaggatgaccctgaggctatgatc
gaagacaactacaaactcatttacgagcaaagtttccagtggaaggccttgcgtctcctt
gcccgccgatgtccccatttcttcactcacaacaacactccagcaataccgattcctaaa
tacctggaactgatggtcaagaaactagccacagaaatgccatcccagtccagtgaagac
acaagcggagatcagcaggagatgaagaccgagatcggggaggaggaagaggccattaag
gagacacaagatgaagaggacctcaaacagggcaatgaaccagacaaggacgagcctgct
gaggagcagctgacgagggcacaactggaaatggtggcagggaagctggccgacgactgg
aagaagctagggacggagctcaacttcccagaagatgatatgggctacttcgaggaatcg
tgtgacaaggtcgctaaactgtctggactcaagatgctgactgtgtggatggaaagcgag
ccggagagggcaaccattggtgcactacagatagccctgaaggagatcggccatgttgat
attgccacagaagtgttcggggccttgacatag
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integrated database retrieval system
